PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05536g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | DBB | ||||||||
Protein Properties | Length: 176aa MW: 19488.2 Da PI: 7.3739 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.1 | 7.7e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H Niben101Scf05536g01001.1 4 LCDACESAAAILFCAADEAALCRACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 28.9 | 2.4e-09 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce +++ lC +C l H g H+ Niben101Scf05536g01001.1 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDLIVHVGgkrtHS 92 6799**************************99966555665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.7E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.338 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.25E-6 | 3 | 45 | No hit | No description |
SuperFamily | SSF57845 | 6.87E-5 | 48 | 88 | No hit | No description |
SMART | SM00336 | 6.4E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.2 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-7 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.21E-7 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MRTLCDACES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAKP SDVPRCDICE 60 NAPAFFYCEV DGSSLCLQCD LIVHVGGKRT HSRYLLLRQK VEFPGDKPGP TEELAGKTLD 120 PGENKREYSH SPKPIVEDNQ QNRRSSPVVV SYGSSDDHAK KDKMIDLNLK PNRYHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761013.1 | 1e-122 | PREDICTED: probable salt tolerance-like protein At1g78600 | ||||
Refseq | XP_016512410.1 | 1e-122 | PREDICTED: B-box zinc finger protein 19-like | ||||
Swissprot | C0SVM5 | 1e-71 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1S4DGB7 | 1e-120 | A0A1S4DGB7_TOBAC; B-box zinc finger protein 19-like | ||||
TrEMBL | A0A1U7V3Q4 | 1e-120 | A0A1U7V3Q4_NICSY; probable salt tolerance-like protein At1g78600 | ||||
STRING | XP_009761013.1 | 1e-121 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 5e-74 | DBB family protein |