PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05469g03009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 303aa MW: 34620.1 Da PI: 8.639

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05469g03009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.5	8.5e-14	24	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +Wt++ + +L++ ++ +l+rg l++++W++v++ + + + +r+ +qCk++++ l+kryk +k+ + + + +s++p Niben101Scf05469g03009.1 24 CWTEEATWTLVDSWGRRYIELNRGFLRQTDWQQVADSVnalhgHTVKTRRTDIQCKNRIDTLKKRYKVEKAKIVESNGTLTSSWP 108 7***********************************9999888999***************9999998888788889 PP trihelix 81 yfdqle 86 +f++l+ Niben101Scf05469g03009.1 109 FFERLD 114 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51029	8.577	19	121	IPR006578	MADF domain
Pfam	PF13837	3.2E-22	22	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGEITASSTQ VTAPSRPLPF REDCWTEEAT WTLVDSWGRR YIELNRGFLR QTDWQQVADS 60 VNALHGHTVK TRRTDIQCKN RIDTLKKRYK VEKAKIVESN GTLTSSWPFF ERLDFLIGNS 120 GNKVTAVMVS PLPLPSRSPP MGVPLPSRRS TTTTAAAPMV TPVVLPQKRQ MPVFDDSYFR 180 RNYSAVAAAA AAEGGEEDYD DAEEEDMGMS EEKDGMRRLA KAIEKFGEIY ERVEEMKQRQ 240 MVELEKQRMQ FAKDLEVQRM QLFMDTQVQL QKIKHTKRSG SDERKSDRLV VANSSQRKSS 300 NDD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234266.1	1e-178	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A1J6L6W0	1e-177	A0A1J6L6W0_NICAT; Trihelix transcription factor asil2
STRING	XP_009757835.1	1e-174	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	6e-48	sequence-specific DNA binding transcription factors