PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05449g03015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 28042.7 Da PI: 8.9367 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.9e-14 | 101 | 145 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Niben101Scf05449g03015.1 101 PWTEEEHRKFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 145 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.73 | 5 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 20.055 | 94 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-18 | 96 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-18 | 97 | 149 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 98 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-10 | 98 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.94E-9 | 101 | 146 | No hit | No description |
Pfam | PF00249 | 2.1E-11 | 101 | 145 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MKIGRKCSHC GNTGHNSRTC STLKCASNGS FIGGLKIFGV QLDIPNDASS SSSSIHLKKS 60 FSLECLSPFV NESCEKSTSI NNGYLSDGLV VRVEERKKGV PWTEEEHRKF LIGLEKLGKG 120 DWRGISRNFV TTRTPTQVAS HAQKYFLRQS SLNKKKRRSS LFDMFKHGDN FDNCLDTTIL 180 TKKDCQEIRA SLLELNSFVE DMSIAKDNQR SENPQQPEEI YSVPNKSISS FGALDLELSL 240 SAPRNIGPIT VT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 157 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760073.1 | 1e-160 | PREDICTED: transcription factor MYB1R1-like | ||||
Refseq | XP_016450701.1 | 1e-160 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q7XC57 | 4e-49 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A1S3YEN8 | 1e-158 | A0A1S3YEN8_TOBAC; transcription factor MYB1R1-like | ||||
TrEMBL | A0A1U7V0Z9 | 1e-158 | A0A1U7V0Z9_NICSY; transcription factor MYB1R1-like | ||||
STRING | XP_009760073.1 | 1e-159 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3385 | 21 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 5e-52 | MYB_related family protein |
Publications ? help Back to Top | |||
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