PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05440g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 39616.3 Da PI: 7.2822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6.1e-19 | 169 | 219 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Niben101Scf05440g02002.1 169 LYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFDTAEDAAMAYDREAYKLRGE 219 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.39E-33 | 168 | 228 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-22 | 169 | 227 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.5E-39 | 169 | 232 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.09 | 169 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 169 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 170 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 170 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 192 | 208 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MNWQRDNGKD FNTSFEKKIK RPEHQLCFQS SVSSSHQTLL QSSVPYSTPT HTAFSPPPLS 60 SSTSRSSRVV FPFALDGTQQ SIESLHQLRS NSTPLFRPMH QNQQQMISFS AQHPQSMELG 120 PFQHQLQQCN ETLHLSPRGT TMMLNKSGQN NRVPLFSPLL QHPYSTTKLY RGVRQRHWGK 180 WVAEIRLPRK RTRLWLGTFD TAEDAAMAYD REAYKLRGEN AKLNFPELFI SKHKVAISSS 240 PTASHESALP GIEMQLAPLP PSECGNFEEE TGSEVIANDG VQSNVENCGA LTQLSDFEAW 300 LNAIPEGWGP GSPVWDHLDT NNNLILSHTI NLGDVHQQKP HNSDLEGTTK PLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 168 | 226 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019225322.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A314KTP4 | 0.0 | A0A314KTP4_NICAT; Ethylene-responsive transcription factor erf053 | ||||
STRING | XP_009787574.1 | 1e-180 | (Nicotiana sylvestris) | ||||
STRING | XP_009592286.1 | 1e-177 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4718 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 2e-57 | ERF family protein |