PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05413g05003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 465aa    MW: 51308.6 Da    PI: 7.4511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05413g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.7e-063533911154
                               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Niben101Scf05413g05003.1 353 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 391
                               5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.28E-7334395No hitNo description
PROSITE profilePS5088812.424342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-12352409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-9352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0036353397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAEEFQQGRR NWRESSSSSS TTTTSSSRNN KFESGILSST TTTLSSVSTA LNSMASNFGC  60
WPTEIKDIKA RSSLNHVSVS ASDNSSMVFP ADPQKLHASE SGALNFQVMG LGLQSQRLDW  120
NEPFFRGEKT GSGFRSILEE GLSSDANYQQ EAGSCQQDHH WTQKIYTGND YNNKQMDRGI  180
SLDHQPVFNS PNMSSNLDNA PYGSPSNMLQ GLLISDSHQE SNFTSATSLY YPPYNPSNCD  240
VNPAAADVMP TLSSSSSWSK FPKQQWPMPS PHGQSHFSGT PFWNASSASM DDVRSGFHLP  300
STHQQLPNRT VDTKPKHTAE DKNIRTIAKK SGSETSNKRP RNEAPSQMPA FKVRKEKMGD  360
RITALQQLVS PFGKTDTASV LSEAIEYIKF LHEQVNVLIT PYMKSGASMQ QHQQSTGDRS  420
NVNPEGAKQD LRSRGLCLVP ISSTFPVTHE TTVDFWTPTF GGTFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229330.10.0PREDICTED: transcription factor bHLH123-like
TrEMBLA0A314KLI60.0A0A314KLI6_NICAT; Transcription factor bhlh123
STRINGXP_009803615.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-58bHLH family protein