PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05411g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 222aa MW: 24739.9 Da PI: 10.2897 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 197 | 219 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L++H+ + H Niben101Scf05411g02003.1 197 ACPECGEVFPKIESLEHHQAVrH 219 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 196 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.596 | 196 | 222 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MKKRTTSSSS TIVILFHFLA LLFMALLTFT PEISENTQKQ PSKRRKKQQI KQQKEKQKQP 60 SSWDQFKNLL TCKQIENSTV HDPASKNSKL GSCSSICSFR DVVHGNTRVV HRADNSPESS 120 SLGQETRLLS KNKASHHHGQ SSSSSRSLAT SNGSASSTYN TTSSSRGMQF RKLSGCYECH 180 MIVDPSRYPL PRSTICACPE CGEVFPKIES LEHHQAVRHA GN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616115.1 | 1e-107 | PREDICTED: uncharacterized protein LOC104108715 | ||||
TrEMBL | A0A1U8GAQ6 | 1e-105 | A0A1U8GAQ6_CAPAN; uncharacterized protein LOC107866896 | ||||
STRING | XP_009616115.1 | 1e-107 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5195 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-55 | C2H2-like zinc finger protein |