PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05395g03019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 921aa MW: 102877 Da PI: 6.1966

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05395g03019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.8e-29	613	664	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Niben101Scf05395g03019.1 613 AEKNITLQILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 664 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.597	603	684	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-25	616	664	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.01E-22	815	908	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-19	821	902	No hit	No description
PROSITE profile	PS51745	22.527	823	906	IPR000270	PB1 domain
SMART	SM00666	1.2E-21	823	906	IPR000270	PB1 domain
Pfam	PF00564	4.7E-16	825	903	IPR000270	PB1 domain
CDD	cd06407	2.91E-37	825	903	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence Send to blast
MSMDERFVVT NTFLTTQFDS FMDLDCMDEL LLEGCFLETI DDRDFVHHRP SISNMPFNSS 60 FVWPTLLDTN GFEFSGSPSK DGQQGRQRSS FSKNLSISQF QELNSAKVQS FGENSINAMC 120 SSGQSENCLF DAPELSRRWW IGPNASSSVM DRLIQALGYI KNFSKDKDIL IQIWVPIYRD 180 GKRILSTNDQ PFSLDLNCPR LAHYRQASLN YQFPANDDSE EIVGLPGRVF LDKVPEWTPD 240 VQFFQMEEYL RVGHAQQYNV RGTLAVPVFE QGSSNCLSVI EVVMTTQKIK YSPELESVCK 300 ALEAVDLRSS EVSSTLTAKA CDLAYQAALS EILEVLKSAC KTHGLPLAQT WVPCIQHGKG 360 GIRHSNENLI RCVSIEDSAC HVADPQVQGF HEACSEHHLL KGQGVVGSAF ITNQPCFTAD 420 LTSYSKAAYP LSHYARMFGL HAAVAIRLRS MSTGSSDFVL EFFLPPNCRN PEEHKRMLAS 480 LSIIIQNVCQ TFRVVTDKEL LEETVSVGEV TSLATSEYSE EVREQERKGS IVSSQERTSW 540 TSSHVEVQET SSVISAFQNG KPVEVPTEEP VAFKNQMNSG SATTFAFSRN YRTSEEGISH 600 NWHKARDRRR LKAEKNITLQ ILQQYFAGSL KDAAKSIGVC PTTLKRICRQ HGIQRWPSRK 660 IKKVGLSLER IQRVINSVQG VSGTLQIESF YSDFPELASK NISRSSPFAD PTYNHPEDLT 720 RPRESGGNNA AISKSVSSSC SQGSSSSQRS TGTQLAGHED PVAEEASDSH ALKRVNSDAE 780 LHLSSDALNP QQRSQSHSSL TESPESVSLS PVKKSLWRSQ EGAPRIKVIH GEDKIRFRMQ 840 KNWGYKELMR ETARRFGVDD PSGFHLKYLD DDSEWVLLTC EADLEECIDV CWSSQNQIIR 900 LLLLCDSQPH LGSSFGSSSS L

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence Send to blast

MSMDERFVVT NTFLTTQFDS FMDLDCMDEL LLEGCFLETI DDRDFVHHRP SISNMPFNSS  60
FVWPTLLDTN GFEFSGSPSK DGQQGRQRSS FSKNLSISQF QELNSAKVQS FGENSINAMC  120
SSGQSENCLF DAPELSRRWW IGPNASSSVM DRLIQALGYI KNFSKDKDIL IQIWVPIYRD  180
GKRILSTNDQ PFSLDLNCPR LAHYRQASLN YQFPANDDSE EIVGLPGRVF LDKVPEWTPD  240
VQFFQMEEYL RVGHAQQYNV RGTLAVPVFE QGSSNCLSVI EVVMTTQKIK YSPELESVCK  300
ALEAVDLRSS EVSSTLTAKA CDLAYQAALS EILEVLKSAC KTHGLPLAQT WVPCIQHGKG  360
GIRHSNENLI RCVSIEDSAC HVADPQVQGF HEACSEHHLL KGQGVVGSAF ITNQPCFTAD  420
LTSYSKAAYP LSHYARMFGL HAAVAIRLRS MSTGSSDFVL EFFLPPNCRN PEEHKRMLAS  480
LSIIIQNVCQ TFRVVTDKEL LEETVSVGEV TSLATSEYSE EVREQERKGS IVSSQERTSW  540
TSSHVEVQET SSVISAFQNG KPVEVPTEEP VAFKNQMNSG SATTFAFSRN YRTSEEGISH  600
NWHKARDRRR LKAEKNITLQ ILQQYFAGSL KDAAKSIGVC PTTLKRICRQ HGIQRWPSRK  660
IKKVGLSLER IQRVINSVQG VSGTLQIESF YSDFPELASK NISRSSPFAD PTYNHPEDLT  720
RPRESGGNNA AISKSVSSSC SQGSSSSQRS TGTQLAGHED PVAEEASDSH ALKRVNSDAE  780
LHLSSDALNP QQRSQSHSSL TESPESVSLS PVKKSLWRSQ EGAPRIKVIH GEDKIRFRMQ  840
KNWGYKELMR ETARRFGVDD PSGFHLKYLD DDSEWVLLTC EADLEECIDV CWSSQNQIIR  900
LLLLCDSQPH LGSSFGSSSS L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773664.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_009773735.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_009773797.1	0.0	PREDICTED: protein NLP5-like
TrEMBL	A0A1U7W185	0.0	A0A1U7W185_NICSY; protein NLP5-like
STRING	XP_009773664.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein