PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05378g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 544aa    MW: 62125.7 Da    PI: 4.6815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05378g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.2e-13300341346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rW+++E el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
  Niben101Scf05378g00019.1 300 RWSKQETELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 341
                               9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159636.7E-29291375No hitNo description
PROSITE profilePS5129311.203296344IPR017884SANT domain
SMARTSM007173.1E-10297345IPR001005SANT/Myb domain
SuperFamilySSF466895.98E-11299348IPR009057Homeodomain-like
CDDcd001671.90E-7300341No hitNo description
Gene3DG3DSA:1.10.10.604.5E-8300341IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEKLQSTHEF PVHEEYVIEA SHSDVGIPAE LPESTSHMAE EPVHQRPKTK KQKLPASDLS  60
AITEENGAGR SLRSRRKSVN ANRLVDESEV VADDGEYVPE QPNDSITNGK NEDLLVENES  120
QGKKVQKKSK RKVAEDGKQV KKSNKTTEAS DQAANKKPKK FSHSTRQKRR QVNKALLEAP  180
EYEIDYQKVP IKDLIILGEH RERLAKKDAA ASQVPTTDQR TSSVQSAPET RQYKLSVLSL  240
PLKPAETESA GASVSNYNED ETYPSDGGAK DNDHQIGSRA NDSSAYFNYQ TYMDKTPSTR  300
WSKQETELFY EAVQQFGTDL SLIQQLFPGR TRRQLKLKYK KEERQHPFRL HDALTNRSKD  360
HSHFERVIER LKQIEAEELQ KADKDESIDL SEEQEVEEGT QGINEEEANS EHVEEKEVEA  420
VEQQDVPERE SPVEDYDSED DSWRWSQYKS EEEEANSEHV EEKEVEAFEQ QDVPEMENPV  480
EDYDSEDDSW RWSQYKSEFT GIETLGQPPP EKHSLLFPNE NPSACGEPTG KKKSTVIVVN  540
RNGH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761827.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X4
RefseqXP_009761828.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X4
RefseqXP_016491352.10.0PREDICTED: transcription factor TFIIIB component B''-like isoform X4
RefseqXP_016491353.10.0PREDICTED: transcription factor TFIIIB component B''-like isoform X4
RefseqXP_016491354.10.0PREDICTED: transcription factor TFIIIB component B''-like isoform X4
TrEMBLA0A1S4BR330.0A0A1S4BR33_TOBAC; transcription factor TFIIIB component B''-like isoform X4
TrEMBLA0A1U7V6110.0A0A1U7V611_NICSY; transcription factor TFIIIB component B'' isoform X4
STRINGXP_009761824.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-43MYB_related family protein