PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05368g02002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 766aa    MW: 87201.1 Da    PI: 5.8517
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05368g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.66.3e-1153937641374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++cA+av+++d + a +lL++++ ++sp gd++qRla++f+ +++arla+++s++ykal  ++ts    ++ l+a++l+ 
  Niben101Scf05368g02002.1 393 LRTLLINCAQAVAADDCRSAIELLKQIRLHSSPFGDSNQRLAHCFADGMEARLAGTGSQIYKALVNKKTS---AADFLKAYHLYL 474
                               6789************************************************************999999...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                 sP+ k+s ++ N++I+  + ++ rvH+iDf+i +G+QWp+L+q +++R++gpp+lRiTg++ p++g   +e++eetg+rLa++
  Niben101Scf05368g02002.1 475 ASSPFRKLSGFASNKTIMTKAGNAARVHVIDFGILYGFQWPTLIQRISAREGGPPKLRITGIEFPQPGfrPAERVEETGRRLADY 559
                               *******************************************************************9***************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++++vpfe+++ +ak++e+++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++   +  ++++ F
  Niben101Scf05368g02002.1 560 AQTFNVPFEYHA-IAKKWETIRLEDLKLEKDEFLVVNCLYRFKNLPDETVLTDSSRTLVLDLIRKINPDIFIHGIVNGAYSAPFF 643
                               ************.7*********************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               ++rf e l ++salfd+lea++pres er+ +Ere++gre+ nv+aceg er+er et+++W+ r  +a F+++p++ ++++ a 
  Niben101Scf05368g02002.1 644 VTRFREVLFHFSALFDMLEANVPRESPERMLIEREIFGREALNVIACEGWERVERPETYKQWQVRNLRARFTQIPFEREVMNRAI 728
                               ************************************************************************************9 PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +   + + + ++e++++l+lgWk+r+++++S+W+
  Niben101Scf05368g02002.1 729 EKVTSSYHKDFVIDENNKWLLLGWKGRTIYALSCWK 764
                               9999999888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.201367744IPR005202Transcription factor GRAS
PfamPF035142.2E-112393764IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MDPRFNSFPT SMNGFSLENQ SLPISSNRWK NNEPRFEAIY QDQKLVNDPR FENNFVPNNI  60
GGVQSVSNVP LSTSNIALTS DIGTEDEYNE DFDFSDTVLS YINQMLMEED MEDKTHMLQE  120
SLEFQAKEKS FYEALGKKYP PSPQKNLSIT YQNDEIPDEY CSGSLDNFRS NSNDSSGYLI  180
DTVINISNDL DSSYAQGLSV CNGTYSSISS SYSLINIIDG FLDSPVSPLH TPDIYNDSHP  240
IWNFRKGVEE ANKFLPTNIK LLDNVDINDL LPLEKRAESG CVAARVEKRD EGETSPTEPR  300
GRKNSHRDDK DLLEEERSSK QAAVYTESTV RSEEFDIVLL HSLGNGKEAL EAYRESLKNA  360
RMKTTVQNGQ SKGYNGGKGR SKKHSSKKEV IDLRTLLINC AQAVAADDCR SAIELLKQIR  420
LHSSPFGDSN QRLAHCFADG MEARLAGTGS QIYKALVNKK TSAADFLKAY HLYLASSPFR  480
KLSGFASNKT IMTKAGNAAR VHVIDFGILY GFQWPTLIQR ISAREGGPPK LRITGIEFPQ  540
PGFRPAERVE ETGRRLADYA QTFNVPFEYH AIAKKWETIR LEDLKLEKDE FLVVNCLYRF  600
KNLPDETVLT DSSRTLVLDL IRKINPDIFI HGIVNGAYSA PFFVTRFREV LFHFSALFDM  660
LEANVPRESP ERMLIEREIF GREALNVIAC EGWERVERPE TYKQWQVRNL RARFTQIPFE  720
REVMNRAIEK VTSSYHKDFV IDENNKWLLL GWKGRTIYAL SCWKPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-483767651379Protein SCARECROW
5b3h_D2e-483767651379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804922.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1U7YLH50.0A0A1U7YLH5_NICSY; scarecrow-like protein 9
STRINGXP_009804922.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein