PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05363g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 374aa    MW: 42114 Da    PI: 9.4466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05363g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-184085147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
  Niben101Scf05363g02005.1 40 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 85
                              79*****************************9.***********985 PP
2Myb_DNA-binding26.81.2e-0894122332
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg 32 
                               ++++ Ed+ ++ a++++G++ W+tIar ++
  Niben101Scf05363g02005.1  94 PFSQTEDDTILAAHAKYGNR-WATIARLLP 122
                               79******************.*******99 PP
3Myb_DNA-binding47.44.6e-15140180647
                               HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
  Niben101Scf05363g02005.1 140 AEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 180
                               69************************9.***********985 PP
4Myb_DNA-binding52.98.2e-17189231347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Niben101Scf05363g02005.1 189 PFSQTEDDTILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 231
                               79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8163590IPR017930Myb domain
SuperFamilySSF466892.27E-2538131IPR009057Homeodomain-like
SMARTSM007171.1E-163988IPR001005SANT/Myb domain
PfamPF002494.3E-184085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-244198IPR009057Homeodomain-like
CDDcd001671.44E-144284No hitNo description
PROSITE profilePS500905.55287122IPR017877Myb-like domain
SMARTSM007172.591128IPR001005SANT/Myb domain
PfamPF002494.5E-694122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-899122IPR009057Homeodomain-like
PROSITE profilePS5129413.302126181IPR017930Myb domain
SMARTSM007178.5E-11130183IPR001005SANT/Myb domain
SuperFamilySSF466896.12E-27140228IPR009057Homeodomain-like
CDDcd001675.47E-12140179No hitNo description
PfamPF139216.1E-16140196No hitNo description
Gene3DG3DSA:1.10.10.601.4E-21140188IPR009057Homeodomain-like
PROSITE profilePS5129425.016182236IPR017930Myb domain
SMARTSM007176.4E-15186234IPR001005SANT/Myb domain
CDDcd001678.74E-11189232No hitNo description
Gene3DG3DSA:1.10.10.601.0E-22189235IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEFFNRCSTS TTSSSCESSS SESSLSGKTP RDGKKSERIK GPWSAEEDKI LTKLVERYGA  60
RNWSLISKYI KGRSGKSCRL RWCNQLSPNV QHRPFSQTED DTILAAHAKY GNRWATIARL  120
LPESLEFDTK KTYFSSSSXA EEDKILTKLV ERYGARNWSL ISKYIKGRSG KSCRLRWCNQ  180
LSPNVQHRPF SQTEDDTILA AHAKYGNRWA TIARLLPGRT DNAVKNHWNS TLKRRYQQLL  240
QQHQQNQSSV VFSDVKINGS ASGSGPCMDY MNANDSPIRG NFPINNVVTT NCSSEFDDPM  300
TTLSLAPPGM GGDELPEKKT ESFPAGFWDV MRDLPEKKME SFPAGFWDVM RDVIAKEVRE  360
YVASSFSGAS TGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-41372356158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-41372356158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237788.11e-141PREDICTED: transcription factor MYB44-like
TrEMBLA0A1J6KH951e-139A0A1J6KH95_NICAT; Transcription factor myb44
STRINGXP_009780273.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-48myb domain protein 73