PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05279g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 83aa    MW: 9231.25 Da    PI: 7.5106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05279g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88e-111054244
                              SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              g WT+e  + + +a + + ++   +W+ +ar +g g+t++++k ++
  Niben101Scf05279g03005.1 10 GYWTAEQNKAFEKALAVYDKDtpdRWSNVARAVG-GKTAEEVKRHY 54
                              78********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.25E-13557IPR009057Homeodomain-like
SMARTSM007178.7E-9860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-5855IPR009057Homeodomain-like
PfamPF002495.8E-81054IPR001005SANT/Myb domain
PROSITE profilePS500906.6671058IPR017877Myb-like domain
CDDcd001672.51E-81254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MASSSMSCHG YWTAEQNKAF EKALAVYDKD TPDRWSNVAR AVGGKTAEEV KRHYEILVLD  60
VMVPFPNYRT TTGGRTSTNT GDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-30173178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244688.11e-48PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1734e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6JBY03e-47A0A1J6JBY0_NICAT; Protein radialis-like 1
STRINGXP_009594360.19e-48(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-31RAD-like 6