PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05201g05003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 245aa MW: 28658.5 Da PI: 8.4788 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 79.5 | 5.4e-25 | 20 | 105 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl+k+y++++de+ ++++sw en+++fvv+++ efak++Lp+yFkh+nf+SF gFkk+ ++ weF++ +F Niben101Scf05201g05003.1 20 FLTKTYQLVDDESSNHIVSWGENETTFVVWKPPEFAKHLLPNYFKHNNFSSF-------GFKKIVPDK---------WEFANGNF 88 9**************************************************9.......9*****999.........******** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 kkg+k ll++i+r+ks+ Niben101Scf05201g05003.1 89 KKGQKYLLCEIQRRKST 105 **************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.1E-42 | 16 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.7E-25 | 16 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.41E-24 | 18 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.8E-21 | 20 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-10 | 20 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-10 | 58 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSSSSVTVQD CERTIMAAPF LTKTYQLVDD ESSNHIVSWG ENETTFVVWK PPEFAKHLLP 60 NYFKHNNFSS FGFKKIVPDK WEFANGNFKK GQKYLLCEIQ RRKSTTQQLH HLKPYHENNT 120 KNIFYQPKTQ NNPSTNDILL LTLTLDNQRL RKRNNFLSSE LAHMKNLYND IINFIQNQVK 180 PVDQKFNLFS LNEGLNLRIN DHCLDHQVNT EDEEPKSSSV KLFGVSLCGK KRLHHQMIDQ 240 EVLEC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
5d8l_B | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
5d8l_D | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
5d8l_F | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
5d8l_H | 6e-13 | 20 | 107 | 5 | 110 | Heat shock factor protein 2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019255244.1 | 1e-154 | PREDICTED: heat stress transcription factor B-4b-like | ||||
Swissprot | Q9C635 | 4e-61 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A1U7Y849 | 1e-149 | A0A1U7Y849_NICSY; heat stress transcription factor B-4-like | ||||
STRING | XP_009794990.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2721 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 9e-62 | heat shock transcription factor B4 |