PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05188g03027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 261aa MW: 27652.2 Da PI: 10.1547 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.6 | 3.7e-37 | 35 | 131 | 3 | 100 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++ s++ ++s s+ +s+ss+ Niben101Scf05188g03027.1 35 VKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPTSFS-TVSVSVRSSSSSI 118 69999***************************************************************777.3444444443455 PP TCP 88 gkaaksaakskks 100 ++ sa+ +k+ Niben101Scf05188g03027.1 119 LTSCISAPLDHKQ 131 4555555433333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.613 | 40 | 94 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.0E-34 | 41 | 129 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MSTSAEGNGA IIDPHQRQQQ QNPSGGGGTN GALIVKKPPV KDRHSKVDGR GRRIRMPIVC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTI PTSFSTVSVS VRSSSSSILT 120 SCISAPLDHK QPPSSQPLIS PAPFILGKRL RPDDETIENG HKEDVGRAAT VVGPTSGFCA 180 VPARPDFGQV WSFAAAPPEM MVPTSAALSL QSSRFFQQQM GEASAARVGN YLPMTQGHLN 240 LLASLSGPPQ PSSGRRDDDG R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444705.1 | 1e-166 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 1e-87 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1S3XXV3 | 1e-164 | A0A1S3XXV3_TOBAC; transcription factor TCP7-like | ||||
STRING | XP_009588219.1 | 1e-163 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 7e-69 | TCP family protein |