PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05175g03008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 437aa MW: 49261.5 Da PI: 4.6935 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105 | 9.7e-33 | 56 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lp+G++F+Ptd+e++++ L k g++ + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r Niben101Scf05175g03008.1 56 LPRGVKFDPTDQEIIWHLLGKVEVGNRsshpfI--DEFIPTVDeddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRR 137 799************777766544444575332..334665544556**********.677888899****************** PP NAM 77 atk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ + +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l Niben101Scf05175g03008.1 138 KIHgdnfgDVRWHKTGRTKPVIL-DGIQRGCKKIMVLYvsPVKGGKAEKTNWVMHQYHL 195 86555555888************.99************6544777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-38 | 42 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.723 | 56 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-14 | 57 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MARPSWLVDS RRIATKIKSA SGDPGAVNWK SNPTKACPNC QFIIDNNDVS NDWPGLPRGV 60 KFDPTDQEII WHLLGKVEVG NRSSHPFIDE FIPTVDEDDG ICYTHPQNLP GVKQDGSVSH 120 FFHRAIKAYN TGTRKRRKIH GDNFGDVRWH KTGRTKPVIL DGIQRGCKKI MVLYVSPVKG 180 GKAEKTNWVM HQYHLGTGED EREGEYVMSK VFYQQQQQVK QGDKIEQELP EDADYLVAKV 240 DPHTPKSVTP EPPRGERISS TMDARQQIAT SSISPTTQYH DVDYTEDDIG ALPEQTENQD 300 QIIENQIDEA ETKVDNETGD DPKWWDSESQ YLLDSQQLVE GLSLCDDLLA SQSPNRDGNE 360 NDKEKKCKPS LADYAQLGPE YLKKDLEDCQ HLVLDPANID MDTPPDFRLS QLEFGSQDSY 420 IAWGGSKFGF DSGEHIG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256868.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X2 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1J6IA34 | 0.0 | A0A1J6IA34_NICAT; Nac domain-containing protein 8 | ||||
STRING | XP_009770385.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |