PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05173g08002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 223aa    MW: 25016.8 Da    PI: 7.5134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05173g08002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-16103153255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y GV +++ +g + AeIrdp   + + +r +lg++ tae+Aa a+++a+ k++g
  Niben101Scf05173g08002.1 103 RYIGVKRRP-WGTFSAEIRDP---NrRGARLWLGTYETAEDAALAYDQAAFKIRG 153
                               699***9*9.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-30103162IPR001471AP2/ERF domain
SMARTSM003806.2E-31103167IPR001471AP2/ERF domain
PROSITE profilePS5103222.708103161IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21103162IPR016177DNA-binding domain
CDDcd000183.60E-26103163No hitNo description
PfamPF008471.8E-11103153IPR001471AP2/ERF domain
PRINTSPR003678.3E-8104115IPR001471AP2/ERF domain
PRINTSPR003678.3E-8127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNSADVTFSF SDFNLLESIK QHLLNDSDFS EIISPMSSSN ALPNSPSSGF GSSPSAENSF  60
EISLWAENFE ETIPNLEEKC ESEEETKGNV VARENNAPQD WRRYIGVKRR PWGTFSAEIR  120
DPNRRGARLW LGTYETAEDA ALAYDQAAFK IRGSRARLNF PHLIGSNMRK PARVTERRSR  180
TRSPEPSSSS STSSSVNVPR KRKIDVINSI ATVCHGWNLQ MLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-26102161160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241433.11e-139PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ8L9K12e-36ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLD7P2321e-162D7P232_NICBE; ERF1
STRINGXP_009781921.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-24ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Todd AT,Liu E,Polvi SL,Pammett RT,Page JE
    A functional genomics screen identifies diverse transcription factors that regulate alkaloid biosynthesis in Nicotiana benthamiana.
    Plant J., 2010. 62(4): p. 589-600
    [PMID:20202168]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]