PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05173g05003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 389aa    MW: 44296.5 Da    PI: 9.3458
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05173g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17103153255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIr p     k +r +lg++ t+e+Aa a+++a+ k++g
  Niben101Scf05173g05003.1 103 RYRGVRRRP-WGKFAAEIRNP---DrKGARLWLGTYETPEDAALAYDQAAYKIRG 153
                               7********.**********8...3245*************************98 PP
2AP261.81.5e-19295345255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIrdp   + k++r +lg++ t+e+Aa a+++a+ k++g
  Niben101Scf05173g05003.1 295 RYRGVRRRP-WGKFAAEIRDP---NkKNARLWLGTYETPEDAALAYDQAAFKIRG 345
                               8********.**********9...5467*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-13103153IPR001471AP2/ERF domain
PROSITE profilePS5103224.302103161IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22103162IPR016177DNA-binding domain
CDDcd000187.55E-29103163No hitNo description
SMARTSM003801.8E-35103167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-31103162IPR001471AP2/ERF domain
CDDcd000184.43E-30294355No hitNo description
PfamPF008472.2E-14295345IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23295354IPR016177DNA-binding domain
PROSITE profilePS5103224.605295353IPR001471AP2/ERF domain
SMARTSM003808.3E-39295359IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-32295354IPR001471AP2/ERF domain
PRINTSPR003675.3E-13296307IPR001471AP2/ERF domain
PRINTSPR003675.3E-13335355IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MYEQTTISDS DLSVLENIKF HLLNDTDFSQ IFSMFDQCFN NAEIINSPNS SYGSSPTEEF  60
SWGDMLTSIN SSWVQVDKLE HKEEAKEKHV VARGVHASQD WNRYRGVRRR PWGKFAAEIR  120
NPDRKGARLW LGTYETPEDA ALAYDQAAYK IRGSKARLNF PHLIGSNISE PVRVAPRRRC  180
LLPEISSSPF SLSFVENKKR REKMNSADLS LLESIQHHLL NDSNIPEIFS AMDSNSPSSS  240
FSNSPSTENN FYYGELTPLI NPTLVATEKS HEFEETNNKE TVSARVAKAP QDWKRYRGVR  300
RRPWGKFAAE IRDPNKKNAR LWLGTYETPE DAALAYDQAA FKIRGSKARL NFPHLVGSGM  360
PEPARVNPRR RSHSPEPSSE NGTPRKLFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27104359469ATERF1
3gcc_A1e-27104359469ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196203NKKRREKM
2197202KKRREK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593489.11e-126PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_016511096.11e-126PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K12e-40ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLS0BAP41e-125S0BAP4_TOBAC; Ethylene response factor 163
STRINGXP_009593489.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]