PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05135g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 173aa    MW: 18925.1 Da    PI: 7.5377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05135g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-152877255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa a++ a  +l+g
  Niben101Scf05135g06001.1 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAAWAYDTAVYYLRG 77
                              59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-342891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-292886IPR001471AP2/ERF domain
PROSITE profilePS5103221.2192885IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-202986IPR016177DNA-binding domain
PfamPF008476.3E-92977IPR001471AP2/ERF domain
PRINTSPR003673.4E-112940IPR001471AP2/ERF domain
CDDcd000182.19E-252987No hitNo description
PRINTSPR003673.4E-116787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEVGGGGQSG GVASSGGCCG AKRKNERPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PVAAAWAYDT AVYYLRGPSA RLNFPELLGG DGGLNDLSAA SIRKKAIEVG GQVDAIQNSL  120
ATHHDHGHDH DHPEVKVHCE TASPSELKPC WFQEKPDLNK KPEPEDPEQD YCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142985663ATERF1
3gcc_A3e-142985663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232862.11e-109PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotO221745e-52ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A1J6KCI41e-106A0A1J6KCI4_NICAT; Ethylene-responsive transcription factor erf008
STRINGPGSC0003DMT4000102281e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.13e-47cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]