PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05123g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 387aa    MW: 42940.4 Da    PI: 4.5999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05123g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19116165255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Niben101Scf05123g02008.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 165
                               69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-36116179IPR001471AP2/ERF domain
PROSITE profilePS5103224.105116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32116175IPR001471AP2/ERF domain
CDDcd000181.06E-32116174No hitNo description
SuperFamilySSF541712.68E-22116175IPR016177DNA-binding domain
PRINTSPR003671.2E-11117128IPR001471AP2/ERF domain
PfamPF008479.3E-12117165IPR001471AP2/ERF domain
PRINTSPR003671.2E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCGGAIISDY TAPSRTSRRL TAELLWGRSD LSNKQNFFNN YHSKRLRSQV VDLDDDFEAD  60
FQDFKDFSND EDVQVDVKRF ALSASKNSTV EGSKSMKTVD SDKDADRFSK RKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDVEA RRIRGNKAKV NFPDEAPVPA  180
SRRIVKVNPQ KVLPKESADS VQPGSTVMNN MEDGCYDSLG FLEEKPMTKQ FGYEDGSNAS  240
GDTGFSSFAP SAGTDIYFNS DVGSNSFDCS DFGWGEPCAR TPEISSVLSA AIESNESQLV  300
EDSASPMKKL KSSPIDPVPD DGNTTNKLSE ELSAFETQMK FLQIPYLEGN WDASVDPFLN  360
PSATQGGENA MDLWSFDDVP SLLGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21116173260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-201151751374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312385.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_016465672.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLQ7Y1W20.0Q7Y1W2_TOBAC; Callus-expressing factor
STRINGXP_009775920.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-66related to AP2 12