PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05118g04012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 148aa MW: 17518.3 Da PI: 10.3203 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.8e-07 | 48 | 76 | 22 | 48 |
T...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 g...tWktIartmgkgRtlkqcksrwqkyl 48 + +W +Ia+ ++ gRt++++k+ w+++l Niben101Scf05118g04012.1 48 RlrlRWVAIASQLP-GRTDNEIKNLWNTHL 76 46667*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.16E-8 | 42 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-5 | 45 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 51 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.214 | 52 | 76 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.24E-4 | 52 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDIDITASTK PKYLVIDRSP PFTKIVANCN TLYCLSSHHY LQHLHDCRLR LRWVAIASQL 60 PGRTDNEIKN LWNTHLKKRR ALILVLANHH HLQPIISLHN VKALGSKLKL VFLRNRISSF 120 HHQEEGLFPH MELKRDWRSI YEFEESRQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 5e-13 | myb domain protein 17 |