PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05109g04005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 369aa    MW: 41600.1 Da    PI: 8.0795
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05109g04005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.5e-1051107155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n  ++k+ + g +  +  Aa a++ a++k++g
  Niben101Scf05109g04005.1  51 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYEDEGAAAHAYDLAALKYWG 107
                               57*******************99998898877788999995699***********98 PP
2AP251.23.2e-16150201155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Niben101Scf05109g04005.1 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 201
                               89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1351117IPR016177DNA-binding domain
PfamPF008471.7E-651107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-1252116IPR001471AP2/ERF domain
SMARTSM003801.4E-1852121IPR001471AP2/ERF domain
PROSITE profilePS5103217.75452115IPR001471AP2/ERF domain
PRINTSPR003674.3E-65364IPR001471AP2/ERF domain
CDDcd000181.79E-24150211No hitNo description
PfamPF008475.9E-12150201IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17150211IPR016177DNA-binding domain
PROSITE profilePS5103218.334151209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17151210IPR001471AP2/ERF domain
SMARTSM003801.2E-24151215IPR001471AP2/ERF domain
PRINTSPR003674.3E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAKLSQQNQR NSSNKLSDNA NTNITTTNGS VLKVKRTRKT VPRDSPPQRS SIYRGVTRHR  60
WTGRYEAHLW DKNCWNESQN KKGRQGAYED EGAAAHAYDL AALKYWGSET ILNFPLSTYE  120
KEIIEMEGQS REEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAT AYDMAAIEYR GLNAVTNFDL SRYIKWLKPN NNNTIDQPNP NVETNMIQTP  240
NHSIGSTSTT TTTTSAFAST SAALICSHFQ LTSNTIMPDF SVTQTRPPSA TSALGLLLQS  300
TKFKEMTLAV ECPPEPVEFS DPPQTNFSED IKTYFDTQEL GGHDQGEDMN ILNEINSFMQ  360
PLLQFDFNA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793520.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7Y4120.0A0A1U7Y412_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009793520.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.18e-99ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]