PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05105g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 648aa    MW: 73069.8 Da    PI: 6.168
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05105g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-182877756
                              --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++ eq+++Le++F+++++p++++r++L++++gL+ +q+k+WFqN+R++ k
  Niben101Scf05105g00001.1 28 HSVEQIQQLETFFKECPHPDENQRRQLSREIGLDPKQIKFWFQNKRTQTK 77
                              6889******************************************9987 PP
2START68.42e-2230941894202
                               EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
                     START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                               m+ +l  lspl+  Rdf f+R++rql   +w+ vdvS d+ ++ + s +   + ++pSg++i++++ng+s vtw+ehv +++++ 
  Niben101Scf05105g00001.1 309 MYEKLHILSPLAGaRDFHFIRCCRQLDPTTWTMVDVSFDNLREIQ-SGGPSQSWKFPSGCVIQDLGNGKSMVTWLEHVYVDDKTH 392
                               78889999***********************************99.88999999***************************9998 PP

                               .HHHHHHHHHHHHHHHHHHHHHHTXX CS
                     START 178 .hwllrslvksglaegaktwvatlqr 202
                                  l+r lv  ++ +gak+w  tlqr
  Niben101Scf05105g00001.1 393 tNRLYRDLVCGRQTFGAKRWIVTLQR 418
                               799*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-17973IPR009057Homeodomain-like
SuperFamilySSF466891.88E-161581IPR009057Homeodomain-like
SMARTSM003892.2E-141783IPR001356Homeobox domain
PROSITE profilePS5007115.6611979IPR001356Homeobox domain
CDDcd000862.51E-152777No hitNo description
PfamPF000464.9E-162877IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084818.306223418IPR002913START domain
SuperFamilySSF559616.87E-17236420No hitNo description
PfamPF018521.3E-17309418IPR002913START domain
SuperFamilySSF559611.24E-10441609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MADSGNEQIG ESSSSRKRSM RQKLCNRHSV EQIQQLETFF KECPHPDENQ RRQLSREIGL  60
DPKQIKFWFQ NKRTQTKALS ERADNNTLRT ENERFHCENM AMREALKNII CPHCDGPPPG  120
EEERRRNLEK MKMANQRLRD EHERISNLIS SFVGRSFALT SQLAPQNNVG SLSSSSDESL  180
VSQNIVNSPI ENQPNNVRGN STANIPPPPP PPPPFEENEE IRVDREKSII FGAVISATDE  240
IVELLQMDEP IWIKSQIDGR YFINRESYEK IYPKPNQAYK SAARIESSKE SGVVTMTAIE  300
LIQIFLDPMY EKLHILSPLA GARDFHFIRC CRQLDPTTWT MVDVSFDNLR EIQSGGPSQS  360
WKFPSGCVIQ DLGNGKSMVT WLEHVYVDDK THTNRLYRDL VCGRQTFGAK RWIVTLQRMM  420
VKSFCEILSM GDKLDFPTSS EMTNSGVRVS FRKNEDISQP KGLIVTAATS LWLPLSFDTV  480
FNFFKDDKTR TQWDVLTNGN AVGELARIPT GFFPGNCISI IQPCVPKENN MLLLQETNID  540
PMGAFIIYAP IDLPAVTSII NGADTTQIPI LPSGFIISPD GRHAADRDNN GISQTGSLLT  600
VTFQILVSVN NNNNDPISKQ QNMEAVATIH TLLSSTVQKI KVALDCTD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771801.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A1U7W3L10.0A0A1U7W3L1_NICSY; homeobox-leucine zipper protein ROC8-like
STRINGXP_009771801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-154homeodomain GLABROUS 11