PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05060g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 356aa    MW: 38560.8 Da    PI: 8.5256
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05060g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.35.1e-3565122359
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                                v+YkeClkNhAaslGghavDGCgEfmps++++  ++++lkCaACgCHRnFHRre+ee
  Niben101Scf05060g03005.1  65 VVTYKECLKNHAASLGGHAVDGCGEFMPSPTANpVDPTSLKCAACGCHRNFHRREPEE 122
                               589******************************9*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.3E-2966120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2366122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3167119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.20768119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.14E-16212278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-25213278IPR009057Homeodomain-like
TIGRFAMsTIGR015659.5E-22220275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDISSNTTTP IATTVKSTEA EPETPIRIQP AKPVSFSNGV LKRHNSLHLP HHHGFNNNNH  60
HHAVVVTYKE CLKNHAASLG GHAVDGCGEF MPSPTANPVD PTSLKCAACG CHRNFHRREP  120
EEPVLPNQNT IPALEYQPHH RHHPPPPLPP HHGGSGGHSS PNSPSPPPIS SAYYPASAPH  180
MLLALSAGLS GPPAENNPLI SPSSNPMSSA HLTNPNGSGR KRFRTKFTQD QKDKMLEFAE  240
KVEWKIQKRD EELINFCRKI GVEKGVLKVW MHNNKCKKDQ ATAAAAVNAV ATATNLNGNN  300
ANGFGFISRN NSDTVASEFH LHHERSSNDK DHVHQLHNND SVSAHGVTTN GSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-172212751873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620291.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG04e-73ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S4B4C90.0A0A1S4B4C9_TOBAC; zinc-finger homeodomain protein 9-like
STRINGXP_009620291.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.19e-67homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]