PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05060g01009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 377aa MW: 42840.9 Da PI: 6.1703

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05060g01009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.8	1.7e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrFhPtdeelv +yLk+k++++++++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wka Niben101Scf05060g01009.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRSFPM-ELIKQVDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 97 579*************************.99***********9888999************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s+ +++ +glkk+Lvfy+gra +g ktdW+mhe+rl Niben101Scf05060g01009.1 98 TGTDRPIYSSdSTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 *****955666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-58	10	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.83	14	173	IPR003441	NAC domain
Pfam	PF02365	1.5E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MDNKSDVEKI DEVMLPGFRF HPTDEELVGF YLKRKIQQRS FPMELIKQVD IYKFDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTTNIESAQ PKKFLDRNFP PNDSWAICRI FKKTNSMANR 180 ALSYPWINPV SEVASPEVFN QSTAVHFGSE NISSLTETGS LLHLSSNNDL ASNVPSYKTL 240 NTMVSRPSFL SSPSTEVPCN FMFSSPEVSM FFNTSPALTS ETIDFEGSNQ QINSFSISSS 300 QEMQRSIGME DDETGLKSNQ DSANNNTTQW ENIRSIGFPF SLTTSLADEW KPSLSWDSPS 360 CPSEISTTYD STNKCYT

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MDNKSDVEKI DEVMLPGFRF HPTDEELVGF YLKRKIQQRS FPMELIKQVD IYKFDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV  120
FYRGRAARGI KTDWMMHEFR LPTTNIESAQ PKKFLDRNFP PNDSWAICRI FKKTNSMANR  180
ALSYPWINPV SEVASPEVFN QSTAVHFGSE NISSLTETGS LLHLSSNNDL ASNVPSYKTL  240
NTMVSRPSFL SSPSTEVPCN FMFSSPEVSM FFNTSPALTS ETIDFEGSNQ QINSFSISSS  300
QEMQRSIGME DDETGLKSNQ DSANNNTTQW ENIRSIGFPF SLTTSLADEW KPSLSWDSPS  360
CPSEISTTYD STNKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-54	16	176	17	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785299.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Refseq	XP_016443589.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3XUN7	0.0	A0A1S3XUN7_TOBAC; putative NAC domain-containing protein 94
TrEMBL	A0A1U7XEB4	0.0	A0A1U7XEB4_NICSY; putative NAC domain-containing protein 94
STRING	XP_009785299.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]