PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05056g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 330aa    MW: 35719.8 Da    PI: 4.9133
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05056g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.8e-36251162102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d++++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F
  Niben101Scf05056g00004.1  25 FLTKTYQLVDDPAIDELISWNEDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCF 100
                               9*****************************************************************99.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +kg+k ll++i+r+k 
  Niben101Scf05056g00004.1 101 RKGEKGLLRDIQRRKI 116
                               *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.16E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.9E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.0E-4186214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVPSPVEQTG ESVAGENQRS LPTPFLTKTY QLVDDPAIDE LISWNEDGTT FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RKGEKGLLRD IQRRKISPAG  120
TAVTAVSPTV AVNAAQAVTI AVAPAARLVS PSNSGDEQVL SSNSSPAATA AAAAVLRTTT  180
CTTTPELLEE NERLRKENAQ LSQELNRLRS LCNNVYNLMS NYTGNPSEMP AGIPEGRALE  240
LLPAGQVAAE MDGGATATPA ECSGVKAEED ISPRLFGVSI GAKRVRRSNE EESEREGIVQ  300
DQVQLHGSDV KSEPLDSGSG HHNGQPDRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-262511720123Heat shock factor protein 1
5d5u_B2e-262511429129Heat shock factor protein 1
5d5v_B2e-262511429129Heat shock factor protein 1
5d5v_D2e-262511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760921.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_016444574.10.0PREDICTED: heat stress transcription factor B-2b-like isoform X1
SwissprotQ9T0D31e-111HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S3XXH50.0A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1
TrEMBLA0A1U7V7G90.0A0A1U7V7G9_NICSY; heat stress transcription factor B-2b
STRINGXP_009760921.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.19e-88HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]