PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05056g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 588aa    MW: 65647.4 Da    PI: 8.2119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05056g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-1957100448
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               WT+eEd ll d+vk++ g++Wk+Ia++m+ gRt+ qc +rwqk+l
  Niben101Scf05056g00001.1  57 WTEEEDNLLTDVVKRFKGRNWKKIAECMN-GRTDVQCLHRWQKVL 100
                               *****************************.************986 PP
2Myb_DNA-binding57.53e-18106152148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEd l++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  Niben101Scf05056g00001.1 106 KGPWSKEEDALIIELVEKYGCKKWSFIAKSLP-GRIGKQCRERWHNHL 152
                               79******************************.*************97 PP
3Myb_DNA-binding51.42.5e-16158200145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               r++WT++E+  l ++++ +G++ W+ Iar ++ gRt++ +k++w+
  Niben101Scf05056g00001.1 158 RDAWTEQEESVLCHYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 200
                               789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.09647100IPR017930Myb domain
SMARTSM007171.1E-1453102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2356116IPR009057Homeodomain-like
SuperFamilySSF466891.65E-1556110IPR009057Homeodomain-like
CDDcd001672.26E-1457100No hitNo description
PfamPF002493.3E-1657100IPR001005SANT/Myb domain
PROSITE profilePS5129431.031101156IPR017930Myb domain
SuperFamilySSF466896.36E-32103199IPR009057Homeodomain-like
SMARTSM007176.8E-17105154IPR001005SANT/Myb domain
PfamPF002499.6E-18106152IPR001005SANT/Myb domain
CDDcd001674.54E-16108152No hitNo description
Gene3DG3DSA:1.10.10.607.1E-28117159IPR009057Homeodomain-like
PROSITE profilePS5129419.973157207IPR017930Myb domain
SMARTSM007175.8E-15157205IPR001005SANT/Myb domain
PfamPF002497.2E-14158201IPR001005SANT/Myb domain
CDDcd001674.24E-11160200No hitNo description
Gene3DG3DSA:1.10.10.601.2E-21160206IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MIQVKEESQT LDFGGFASCS SFSDSSYEAS TPRYSSEPGS SYRRSSGPTK RSSQAGWTEE  60
EDNLLTDVVK RFKGRNWKKI AECMNGRTDV QCLHRWQKVL NPELVKGPWS KEEDALIIEL  120
VEKYGCKKWS FIAKSLPGRI GKQCRERWHN HLDPTIKRDA WTEQEESVLC HYHQIYGNKW  180
AEIARFLPGR TDNAIKNHWN SSVKKRSNLN LPRRLVLDTE SDGSPNFSSD KKKLEIKKHP  240
LQAQNAEQTI FLGEQSGLDN AAVALSTDLR IGYAYSAGNA LHKDTSLFGV CISAEENVRD  300
LIKPLGGIQF GKADVLPIGE TDEPCQSNLS RTKISYPLSA SSSDFPLDQL HHTRWRTSQV  360
EAVHPTTFGS MYESPRWSTH DTVNDPDHDF LSLSLASFTE VHSQSNKKNK AYDTQPSLGL  420
KQQGSLYYEP PQLKDLLIPL TDENLSRDNL IGQKNGHPFC STPPTLKLTV SANGSSPESV  480
LRNSAMSYTG TPSIIRKKNS RFPEAATHSS CTGTTTPTHH FPRASDREDT SNLKDRFSGC  540
KSSVSGKSLG RRLEYAFDME WDASRCCTPV SAASPCALRL GANTMLTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-64572069158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-64572069158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263449.10.0PREDICTED: uncharacterized protein LOC109241187
TrEMBLA0A314L7P80.0A0A314L7P8_NICAT; Myb-related protein 3r-1
STRINGXP_009761862.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.16e-79Homeodomain-like protein