PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05017g06021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 32183.8 Da PI: 9.1306 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 25 | 69 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+eE +++ a + + +W ++a ++ g+t +++ + Niben101Scf05017g06021.1 25 EWTQEENKKFESALAIYDETtpnRWFKVADLIP-GKTVYDVMKQYK 69 7*****************99*************.*******98876 PP | |||||||
2 | Myb_DNA-binding | 40.6 | 5.8e-13 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky Niben101Scf05017g06021.1 132 PWTEEEHRRFLMGLDKHGKGDWRNISRNFVISKTPTQVASHAQKY 176 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 18 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 7.751 | 21 | 76 | IPR017884 | SANT domain |
SMART | SM00717 | 8.4E-9 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-11 | 24 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-6 | 25 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.49E-8 | 25 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 122 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.38 | 125 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-16 | 126 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-17 | 128 | 180 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.4E-11 | 129 | 179 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-11 | 132 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.22E-9 | 132 | 176 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
METLSPTSLI PNSSWMMMEH RKNSEWTQEE NKKFESALAI YDETTPNRWF KVADLIPGKT 60 VYDVMKQYKE LAADVSDIEA GLFPVPPTYF TSSFMLDLVD DHHHHHHHHH RSVQSFKKRG 120 RCYDQERKKG VPWTEEEHRR FLMGLDKHGK GDWRNISRNF VISKTPTQVA SHAQKYYLRQ 180 LSGGKDKRRP SIHDITTVNL TNIDLSNNNL NSSNNKSLSS FAVNNPFQNS NDGALMAFGS 240 SYNGSSNPYE LGSLLSRGRY GTDNISANDN SQIQRYQIWG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 128 | KKRGRCYDQERKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767350.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016475542.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 7e-83 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S4AFU1 | 0.0 | A0A1S4AFU1_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7VZB7 | 0.0 | A0A1U7VZB7_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009767350.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-81 | MYB family protein |
Publications ? help Back to Top | |||
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