PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04993g06012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 300aa MW: 33363.9 Da PI: 6.0469

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04993g06012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	48.8	1.2e-15	79	151	1	73
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 l+elL +cAeavs+ d + a+ l++ l++++s +g+pm+Rl ay++e+L+arl++s+s +yk+l+++e ++++ Niben101Scf04993g06012.1 79 LKELLDACAEAVSNADISTAEVLMNILEKRVSVSGEPMERLSAYVLEGLRARLLSSGSIIYKKLKCKEPTSSE 151 578999**************************************************************99654 PP
2	GRAS	135.6	5.4e-42	182	300	186	304
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +++le+Lrv++gEalaVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl rf ++l+yy a+f+s Niben101Scf04993g06012.1 182 GCEVQLENLRVRHGEALAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFHDTLDYYIAMFES 266 56899****************************************************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegae 304 ++a pr++++ri+ E+++++r+ivn++acega+ Niben101Scf04993g06012.1 267 IDAARPRDDKQRISAEKHCVARDIVNIIACEGAD 300 *****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.357	1	300	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-13	79	151	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-39	182	300	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSDQHHSSDN NTCGSPFSGC SGVDDGYLKH VLRELENKLL GPESDTDDSC SCSFNIVVSK 60 PSSLTRWNRV LDMAPSLSLK ELLDACAEAV SNADISTAEV LMNILEKRVS VSGEPMERLS 120 AYVLEGLRAR LLSSGSIIYK KLKCKEPTSS ELLSYRIGKS VDVPPPRSLS SAWWAPFVRI 180 TGCEVQLENL RVRHGEALAV NFPYMLHHMP DESVSTINHR DRLLRLVKSL SPKIVTLVEQ 240 ESNTNTAPFL PRFHDTLDYY IAMFESIDAA RPRDDKQRIS AEKHCVARDI VNIIACEGAD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-16	184	300	189	303	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269\|PubMed:16680434}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269\|PubMed:16680434}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487801.1	1e-165	PREDICTED: scarecrow-like protein 13
Swissprot	Q9M0M5	3e-59	SCL13_ARATH; Scarecrow-like protein 13
TrEMBL	A0A1S4BG19	1e-164	A0A1S4BG19_TOBAC; scarecrow-like protein 13
STRING	XP_009773976.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA681	24	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17230.1	1e-61	SCARECROW-like 13