PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04993g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 559aa    MW: 62683.6 Da    PI: 5.5961
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04993g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.75e-1281905592374
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                               +elL +cAeavs+ d + a+ l++ l++++s +g+pm+Rl ay++e+L+arl+ s+s +yk+l+++e +   sse l+++++ ++
  Niben101Scf04993g05001.1 190 KELLDACAEAVSDADISTAEILMNILEQRVSVSGEPMERLSAYVLEGLRARLLLSGSIIYKKLKCKEPT---SSELLSYMQVIYN 271
                               78999***************************************************************9...9************ PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                               ++P++kf+++ aN  I ea+ +e+r+HiiDf+i qG QW+ Ll+ La Rp+gpp +RiTgv++++s   +   l+ +ge+La++A
  Niben101Scf04993g05001.1 272 MCPYYKFAYMSANVVIREAMTNENRIHIIDFQIAQGSQWMFLLHDLARRPGGPPFVRITGVDDSQSAhaRGGGLQLVGEKLAEVA 356
                               ***************************************************************9988889999************ PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               +++gvpfef+  +a +  +++le+Lrv++gEalaVn+ ++lh+++desvs+ ++rd++L+l+kslsPk+v++veqe+++n+++Fl
  Niben101Scf04993g05001.1 357 KSCGVPFEFHG-AALSGCEVQLENLRVRHGEALAVNFPYMLHHMPDESVSTINHRDRLLRLIKSLSPKIVTLVEQESNTNTAPFL 440
                               ***********.8999********************************************************************* PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                                rf e+++yy+a+f+s++a  pr++++ri+ E+++++r+ivn++acega+r+erhe ++kWr rl++aGF+p +ls ++ ++++ 
  Niben101Scf04993g05001.1 441 PRFRETFDYYAAMFESIDAARPRDDKQRISAEEHCVARDIVNIIACEGADRVERHELFGKWRLRLMMAGFTPCQLSPSVCETIND 525
                               ************************************************************************************* PP

                      GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +l++++ + yr  e++g+l+lgWk+r+L + SaWr
  Niben101Scf04993g05001.1 526 MLKEYSPN-YRFAESEGALYLGWKNRALATSSAWR 559
                               ******55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.722163540IPR005202Transcription factor GRAS
PfamPF035141.7E-125190559IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MRMQASQRPQ MSGGVHGLYN QPMQQVEQYY APYHFKNNNC NNTSSVTQFA FQTQNEHFFT  60
LDSLPATDFV VYDSPPALSV SSNRSPFSPQ CSQSYMSDLH HSSDNNTCGS SFSGCSGVDD  120
GDLKHVLREL ENKLLGPESD TDDSCSCSFN DVVSKPSSLT RWNRVLDMAP SLNLKELLDA  180
CAEAXDLNLK ELLDACAEAV SDADISTAEI LMNILEQRVS VSGEPMERLS AYVLEGLRAR  240
LLLSGSIIYK KLKCKEPTSS ELLSYMQVIY NMCPYYKFAY MSANVVIREA MTNENRIHII  300
DFQIAQGSQW MFLLHDLARR PGGPPFVRIT GVDDSQSAHA RGGGLQLVGE KLAEVAKSCG  360
VPFEFHGAAL SGCEVQLENL RVRHGEALAV NFPYMLHHMP DESVSTINHR DRLLRLIKSL  420
SPKIVTLVEQ ESNTNTAPFL PRFRETFDYY AAMFESIDAA RPRDDKQRIS AEEHCVARDI  480
VNIIACEGAD RVERHELFGK WRLRLMMAGF TPCQLSPSVC ETINDMLKEY SPNYRFAESE  540
GALYLGWKNR ALATSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6019655826378Protein SCARECROW
5b3h_A2e-6019655825377Protein SCARECROW
5b3h_D2e-6019655825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487801.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S4BG190.0A0A1S4BG19_TOBAC; scarecrow-like protein 13
STRINGXP_009773976.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13