PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04991g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 455aa MW: 50621.2 Da PI: 6.6479

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04991g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.7e-05	347	384	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +++l+ + +K + a++L +A+eYIk L Niben101Scf04991g00003.1 347 RKEKLGDRITAIQQLVSPF-----GKTDTASVLHEAIEYIKFL 384 5566777888888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	335	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.55E-11	345	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.04E-4	345	388	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-7	349	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MADEFQAGVC GGNWWNSSRS IFGSSPCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD 60 DSVVLQELPK HHQQPHDSTL QMLGIGLSSS SISSTPDWNH TMMHGNERAD SSYPSVLQED 120 LNSSLNYRQE TGVDCSHELG KNFSIITEDS SNNSYKQVNH QDFTLRMNPI TSSTNTDQST 180 VISSTFPLNS SFSNYPSAFL QTLFDNDPPP PQQQPQQQSL FTNNNQPMNF PVSLNYRPNL 240 NDYFSPSLPK FPPLLRPSLP KQTPSSFPFT NPTSLNNMRG NLLPSMHSQL LLQSPTFHKK 300 SSVPNNSAKS NVEEIRESRV KKSGNSEPAL KRPRMETPSP LPTFKVRKEK LGDRITAIQQ 360 LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKTGS PPLHQQTADK VKEQEGSKLD 420 LRSRGLCLVP ISSTFPVATE TTTDFWTPNF GDTFR

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MADEFQAGVC GGNWWNSSRS IFGSSPCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD  60
DSVVLQELPK HHQQPHDSTL QMLGIGLSSS SISSTPDWNH TMMHGNERAD SSYPSVLQED  120
LNSSLNYRQE TGVDCSHELG KNFSIITEDS SNNSYKQVNH QDFTLRMNPI TSSTNTDQST  180
VISSTFPLNS SFSNYPSAFL QTLFDNDPPP PQQQPQQQSL FTNNNQPMNF PVSLNYRPNL  240
NDYFSPSLPK FPPLLRPSLP KQTPSSFPFT NPTSLNNMRG NLLPSMHSQL LLQSPTFHKK  300
SSVPNNSAKS NVEEIRESRV KKSGNSEPAL KRPRMETPSP LPTFKVRKEK LGDRITAIQQ  360
LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKTGS PPLHQQTADK VKEQEGSKLD  420
LRSRGLCLVP ISSTFPVATE TTTDFWTPNF GDTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764035.1	0.0	PREDICTED: transcription factor bHLH112-like
Refseq	XP_016490372.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1S4BNE2	0.0	A0A1S4BNE2_TOBAC; transcription factor bHLH112-like
TrEMBL	A0A1U7VQ73	0.0	A0A1U7VQ73_NICSY; transcription factor bHLH112-like
STRING	XP_009764035.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-56	bHLH family protein