PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04988g01015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 606aa MW: 69381.1 Da PI: 6.9024 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 506 | 552 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+e+++d v+ + Wk + ++ +t+++++s+++++ Niben101Scf04988g01015.1 506 LSWTAEEEERFKDMVRSSATSnnKWKNSKKLLP-SKTRNMLVSYYFNV 552 68**************99877889***999999.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51011 | 16.265 | 1 | 83 | IPR001606 | ARID DNA-binding domain |
SMART | SM00501 | 2.1E-4 | 1 | 84 | IPR001606 | ARID DNA-binding domain |
SMART | SM01014 | 0.0015 | 4 | 79 | No hit | No description |
Pfam | PF01388 | 1.2E-9 | 13 | 79 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF46774 | 6.93E-16 | 14 | 84 | IPR001606 | ARID DNA-binding domain |
Gene3D | G3DSA:1.10.150.60 | 2.9E-12 | 14 | 84 | IPR001606 | ARID DNA-binding domain |
PROSITE profile | PS51156 | 9.124 | 406 | 450 | IPR000949 | ELM2 domain |
CDD | cd00167 | 2.41E-4 | 507 | 553 | No hit | No description |
PROSITE profile | PS50090 | 5.993 | 507 | 553 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-4 | 507 | 552 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MAVMAVVTEK KCVRPLPVIT GSGQPLDLFK LYWIVRKIGG YDRVSSKNLW GFVSEHCGLD 60 VGTVAFVRLV YVKYLAEFDN WLRQFCKDGN LEKGEGGVIR GLDLLSKELE TRFRRLLLRR 120 CQKKKDTNLL PSENDQVDFE MFTAESVNKT NDHTTRRSYS AENSNGNLYN SDEISISKMD 180 DDYVFLVSAE GIVEKVLYKA PDKSNNEYDD DENFFAHDGK NKVTSNGEVI QRAASAKSVI 240 ENVFDSRKRK RESSCFSGML NWINHAAKHS NDPEIGEVPE SSKWKGHTSN EFWFQVLLVK 300 EALLKRRHID TKAEESNPQK KQRMHPSMYE EERFNNQPTE NLRCSKRIPV SPKHAPCPCC 360 NSCSTSHNKA ATHQKEEEED IRPDLTSVEV SVTKKIDDSG DQQTHPEVSV GPLHQAEVPE 420 WSGVISESDS KWLGTQMWPP EVETTKSLVE LDPIGEGRRS SCGCRFPQSV ECIRFHIAEK 480 RFKLKLELGP LFNRWRFDRM GEEVSLSWTA EEEERFKDMV RSSATSNNKW KNSKKLLPSK 540 TRNMLVSYYF NVFLIRRRSY QNRVTPKELD SDDDEIELGS VGDSFGNIAV HIPSSRSLTC 600 VENKTD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 124 | RRLLLRRCQKKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019250935.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 | ||||
TrEMBL | A0A1J6IUN6 | 0.0 | A0A1J6IUN6_NICAT; At-rich interactive domain-containing protein 2 | ||||
STRING | XP_009790417.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9472 | 3 | 4 |