PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04967g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24986.8 Da PI: 6.3687 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.7e-05 | 73 | 113 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+++ + ++ L++l+P+ + + K + i+ + +++Ik L+ Niben101Scf04967g00009.1 73 RRKMAEMYSLLQSLVPTlS---NVHKETRENIVAESTDHIKRLE 113 89***************44...9999***************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.804 | 60 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-7 | 70 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-7 | 71 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 10.448 | 153 | 218 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MWKEMMKEET EEEEIERLFM GVMEGYKDAC IPPLTDFSTT NEMVSLNYGN RQRKEGPILE 60 NESINIQKGR EGRRKMAEMY SLLQSLVPTL SNVHKETREN IVAESTDHIK RLEQEIARLE 120 NLKKSFLVDK PTLSQCRNRF SSVSVTVSKG LAIFGIQFQL SQGVMTNIFC VLDKHHAEVL 180 AANISVSDHR IATLTITVMI RNNKSDIVEN IQRELLLV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630063.1 | 1e-124 | PREDICTED: uncharacterized protein LOC104120081 | ||||
Refseq | XP_009803955.1 | 1e-125 | PREDICTED: uncharacterized protein LOC104249264 | ||||
Refseq | XP_016496901.1 | 1e-124 | PREDICTED: uncharacterized protein LOC107815786 | ||||
TrEMBL | A0A1S4C726 | 1e-123 | A0A1S4C726_TOBAC; uncharacterized protein LOC107815786 | ||||
TrEMBL | A0A1U7YZ10 | 1e-123 | A0A1U7YZ10_NICSY; uncharacterized protein LOC104249264 | ||||
STRING | XP_009803955.1 | 1e-124 | (Nicotiana sylvestris) | ||||
STRING | XP_009630063.1 | 1e-124 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13248 | 14 | 15 |