PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04960g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 431aa    MW: 48633.5 Da    PI: 5.3023
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04960g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.55e-93434231373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.. 83 
                               l++lLl+cA+a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r +++  +     +++  ++ + +++++l  
  Niben101Scf04960g00001.1  43 LEKLLLHCANALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVCPTETNNYLYGSSN-LDQRRLMSVTELvg 126
                               5799***************************************************776655444333333.23455555555578 PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerL 165
                               ++++ P+++f++ + N aI++a+eg+++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   s+    + + ee+g rL
  Niben101Scf04960g00001.1 127 YVDLIPWHRFGFCASNGAIYKAIEGHTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPSVppfLNVSSEEVGLRL 211
                               **************************************************************988866668889999******** PP

                      GRAS 166 akfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveq 244
                               a+fA+  +vpfef+v+    +   l+ l+++ L+++ +Eal+Vn++  l ++ de+ + +s   rd +L+ vk+l+P +++vv++
  Niben101Scf04960g00001.1 212 ANFAKFGDVPFEFQVIedlsYDMLLSHLSPSILQLRDDEALVVNCQNWLRYMTDEQIKGSSisSRDIFLDRVKDLNPCILTVVDE 296
                               ***************9765434467788**************************9977666669********************* PP

                      GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                               ++d++++s+  r++ +++y +  fd+le+ lp++s++r  +E+  +g +i+n++  +g +r+er e  +k ++r+e++GF +vp+
  Niben101Scf04960g00001.1 297 DSDLGNSSLTSRIATCFNYLWIPFDALETFLPKDSRQRLDYEAD-IGHKIENIIGFKGVQRIERLECCNKFSQRMENSGFMSVPF 380
                               ********************************************.**************************************** PP

                      GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                e++ k++k+ll +++  g+ ++ e+g lvl+Wk+++ v ++aW
  Niben101Scf04960g00001.1 381 CEETIKEVKSLLDEHA-SGWGMKREDGMLVLTWKGHNSVYATAW 423
                               ****************.899************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.2817405IPR005202Transcription factor GRAS
PfamPF035141.7E-9043423IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MKAELRGNST TIPIQNPNLF NNPQNSPTGA LKGCTGSLDG ACLEKLLLHC ANALENNDVT  60
LAQQVMWVLN NLASSNGDPN QRLTSWFLRA LISRASRVCP TETNNYLYGS SNLDQRRLMS  120
VTELVGYVDL IPWHRFGFCA SNGAIYKAIE GHTKVHILDF SITHCMQWPT LIDAIAKRPE  180
GPPSLRISVP SWRPSVPPFL NVSSEEVGLR LANFAKFGDV PFEFQVIEDL SYDMLLSHLS  240
PSILQLRDDE ALVVNCQNWL RYMTDEQIKG SSISSRDIFL DRVKDLNPCI LTVVDEDSDL  300
GNSSLTSRIA TCFNYLWIPF DALETFLPKD SRQRLDYEAD IGHKIENIIG FKGVQRIERL  360
ECCNKFSQRM ENSGFMSVPF CEETIKEVKS LLDEHASGWG MKREDGMLVL TWKGHNSVYA  420
TAWVPMDMRI E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-581642565474Protein SHORT-ROOT
5b3h_B6e-591642511420Protein SHORT-ROOT
5b3h_E6e-591642511420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251488.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1J6IIK30.0A0A1J6IIK3_NICAT; Scarecrow-like protein 32
STRINGXP_009792999.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-126GRAS family protein