PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04934g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 24389.5 Da PI: 9.9049 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56 | 5.1e-18 | 3 | 47 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+ +r+v + R ++++KKAeELSvLCd+e+ +i+fs++ k ey Niben101Scf04934g00005.1 3 NEHRRSVVLQERIETLFKKAEELSVLCDVEIGIIVFSPDKKNAEY 47 899************************************998888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.236 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-6 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-17 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.82E-15 | 2 | 51 | No hit | No description |
Pfam | PF00319 | 4.2E-15 | 2 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-7 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-7 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MANEHRRSVV LQERIETLFK KAEELSVLCD VEIGIIVFSP DKKNAEYVWP SRDKFKQLMM 60 RYLDKPRVER LKKLTTNEMF LRKEMDAKMK KIDQQKTEEK EMEQLFSQLY LGEKTVFDLD 120 KRQIIGVRNL AIKAKEKAVK RRIQLKYLQD QRLSLPHRVA PVNVEDQRLQ LSVDDPLALR 180 LAPLNVQDQP LQLLDDPLAL RLAPPEN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760062.1 | 1e-131 | PREDICTED: MADS-box transcription factor 31-like | ||||
TrEMBL | A0A1U7UVK3 | 1e-130 | A0A1U7UVK3_NICSY; MADS-box transcription factor 31-like | ||||
STRING | XP_009760062.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 5e-14 | M-type_MADS family protein |