PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04905g07006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 392aa MW: 44393.7 Da PI: 6.1062

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04905g07006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.7	1.7e-24	52	122	2	72
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 W ++e++aLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k++++ + Niben101Scf04905g07006.1 52 WVQEETRALISLRRELDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKHNQELNG 122 ****************************************************************9988763 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-4	43	110	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.711	44	108	IPR017877	Myb-like domain
SMART	SM00717	6.8E-6	48	110	IPR001005	SANT/Myb domain
CDD	cd12203	1.92E-28	50	115	No hit	No description
Pfam	PF13837	6.9E-18	51	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MIIEVATPDA HLQQPQQILL PGISGGDTTS SGGEDNNNNN LKLAPKKRAE TWVQEETRAL 60 ISLRRELDSL FNTSKSNKHL WDQISLKMRE KGFDRSPTMC TDKWRNLLKE FKKAKHNQEL 120 NGSAKMSEAE TIPFTWMKVS LQKKTILYLK KVLLMASSEE GDEYENGRPT LNLERQLDHD 180 GHPLAITAAD AVTASGSPWN WRETPGNENG RPTLNLERQL DHDGHPLAIT AADAVTASGS 240 PWNWRETPGN GEQSNSAGGR VISVKWGDYT KRIGIDGTAD AIKQAIKSAF RLRTERAFWL 300 EDEQNIVRAL DRDMPLESYT LHVDEGLTIK VCMYEEADHL PVHTEDKTFY TTNDFRDFLS 360 HRGWTCLREY NGYRHVDMLD ELCPGAVYRG VN

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MIIEVATPDA HLQQPQQILL PGISGGDTTS SGGEDNNNNN LKLAPKKRAE TWVQEETRAL  60
ISLRRELDSL FNTSKSNKHL WDQISLKMRE KGFDRSPTMC TDKWRNLLKE FKKAKHNQEL  120
NGSAKMSEAE TIPFTWMKVS LQKKTILYLK KVLLMASSEE GDEYENGRPT LNLERQLDHD  180
GHPLAITAAD AVTASGSPWN WRETPGNENG RPTLNLERQL DHDGHPLAIT AADAVTASGS  240
PWNWRETPGN GEQSNSAGGR VISVKWGDYT KRIGIDGTAD AIKQAIKSAF RLRTERAFWL  300
EDEQNIVRAL DRDMPLESYT LHVDEGLTIK VCMYEEADHL PVHTEDKTFY TTNDFRDFLS  360
HRGWTCLREY NGYRHVDMLD ELCPGAVYRG VN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-41	46	127	1	82	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016434047.1	0.0	PREDICTED: trihelix transcription factor GT-4-like
Swissprot	Q9LU92	1e-137	TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBL	A0A1S3X2C2	0.0	A0A1S3X2C2_TOBAC; trihelix transcription factor GT-4-like
STRING	XP_009784713.1	0.0	(Nicotiana sylvestris)
STRING	XP_009599397.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	1e-135	Trihelix family protein