PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04889g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 18962.5 Da PI: 10.4879 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ +v++lG+g+W+ I+r++ ++Rt+ q+ s+ qky Niben101Scf04889g00020.1 97 AWTEEEHRTFLVGVEKLGKGDWRGISRKFVTTRTPTQVASHAQKY 141 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.862 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.215 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-17 | 91 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-11 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-12 | 94 | 140 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 94 | 144 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.25E-9 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 8.3E-13 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MRRKCSHCGK IGHNSRTCTS FKVGAISSGL RLFGVQVVDN ISSSSSSSSS SSHDIHLKKS 60 LSLDCLSSSE KTSCTNGCLS ENCLLGQAHQ HRRKGVAWTE EEHRTFLVGV EKLGKGDWRG 120 ISRKFVTTRT PTQVASHAQK YFLRLSTHHL INNKKRLAAA LDLELSLAAP TNN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773328.1 | 4e-86 | PREDICTED: protein REVEILLE 4-like | ||||
Refseq | XP_016515921.1 | 5e-86 | PREDICTED: protein REVEILLE 4-like | ||||
TrEMBL | A0A1S4DR61 | 1e-84 | A0A1S4DR61_TOBAC; protein REVEILLE 4-like | ||||
TrEMBL | A0A1U7W3Z9 | 1e-84 | A0A1U7W3Z9_NICSY; protein REVEILLE 4-like | ||||
STRING | XP_009773328.1 | 2e-85 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3385 | 21 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 2e-37 | MYB_related family protein |