PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04869g07001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 251aa MW: 27812 Da PI: 9.4934 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.1 | 2.2e-31 | 175 | 231 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RR++Rak+e ekkl +k rkpylheSRh+hAl+R+R+sgGrF Niben101Scf04869g07001.1 175 QEPVFVNAKQYHGILRRRESRAKAELEKKL-IKVRKPYLHESRHQHALKRARASGGRF 231 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-34 | 173 | 234 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.027 | 174 | 234 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-26 | 176 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-22 | 177 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 179 | 199 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.0E-22 | 208 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MQSKSKSAIC GEARIFNAPN SIVYSEPWWN TAGYNPVSMG LMRGSASDSS SREQSVDGRS 60 QSDGGASEED DDAPEKSQSN IPMHSDGSYR QQQQQQQTQF DQNLQPIAST IPPKGDGSQT 120 QPPQLELVTH SIACAPNLYA DLYYGGMMTP FGQRMVPHVI DMHHPRMPLP HEMAQEPVFV 180 NAKQYHGILR RRESRAKAEL EKKLIKVRKP YLHESRHQHA LKRARASGGR FAKKSDTDTS 240 KGTGSGSGSK F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-18 | 175 | 247 | 2 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617196.1 | 1e-156 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
Refseq | XP_009617197.1 | 1e-156 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
Refseq | XP_018630899.1 | 1e-156 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
TrEMBL | A0A1S3XRI4 | 1e-154 | A0A1S3XRI4_TOBAC; nuclear transcription factor Y subunit A-1-like | ||||
STRING | XP_009617196.1 | 1e-155 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 1e-48 | nuclear factor Y, subunit A1 |