PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04867g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 697aa MW: 78728.7 Da PI: 5.2187

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04867g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	49.2	9.2e-16	376	453	2	82
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 ++lL++cA+ v+++d + a + L+++++++sp+gd+ qRla++f+ +L+arla+++++ y+al+p++ + +e+l+a++ Niben101Scf04867g00001.1 376 RTLLISCAQSVAADDRRTAYEQLKQIRQHSSPTGDAYQRLASVFADGLEARLAGTGTQQYAALAPKRIT---AAEKLKAYQ 453 789************************************************************999988...667766665 PP
2	GRAS	227.1	8.4e-70	455	694	136	373
GRAS 136 pegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218 p+gpp+lRiTg++ +++g +e+le+tg+rLak++e+++vpfe+++++++++e++++e+L++ +gE++aVn+ ++l++llde+v Niben101Scf04867g00001.1 455 PGGPPKLRITGIDLSQPGfrPAESLEQTGNRLAKYCERFHVPFEYTAIATQNWENIKIEDLKLASGETVAVNCLFRLKNLLDETV 539 799*********999999************************999****************************** PP GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 ++s+rd+vL l+++++P+++v + + +++++ F++rf eal +ys+lfd+++a+lpr++++r E+e+ +re++nv+aceg+ Niben101Scf04867g00001.1 540 VVDSPRDAVLCLIRKMNPDIFVQAVVNGSYSAPFFVTRFREALFHYSTLFDMFDATLPRDDQQRLHFEQEFYRREAMNVIACEGS 624 ********************************************************************************* PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 er+er et+++W+ r ++aGFk +pl+++ +++ ++ ++ + + + +e+ +++++gWk+r L S+W Niben101Scf04867g00001.1 625 ERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLSCKVKGGYHRDFVFDEDGNWMLQGWKGRVLCGSSCW 694 *************************************9999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.012	349	430	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-13	376	453	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	35.839	431	675	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-67	455	694	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MDPRFNPLPH SVNTYEFEDQ INLSSFEESL NHPLSYTDNY VAFGAPYNTS SPDVGNFAPS 60 SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPCMFHD PLALKAAEKS LYELLGKSYP 120 PSPYHTSDYV DHQLKSPDSI LWNSSEHSTS SSNTGTNSTN PQWVVDPGES RLPVESHPSE 180 YNIQPLVQSN SERFRGSLNN FNNSNAHVDS LVNPNVISNV FTDSESILQF KRGMEEASKF 240 LPNLSQFVID LDKYTFPPKM EEVSKEAVVK VEKDEKNHSP NGTKGRKHQY PEDSDHEDER 300 SNKQSAIYVE EEVELSEMFD RVLLCTDKGT GCSDVKREMP SEVNKSSDQN GQAHGSNGGK 360 TRAKKQGTKN EAVDIRTLLI SCAQSVAADD RRTAYEQLKQ IRQHSSPTGD AYQRLASVFA 420 DGLEARLAGT GTQQYAALAP KRITAAEKLK AYQMPGGPPK LRITGIDLSQ PGFRPAESLE 480 QTGNRLAKYC ERFHVPFEYT AIATQNWENI KIEDLKLASG ETVAVNCLFR LKNLLDETVV 540 VDSPRDAVLC LIRKMNPDIF VQAVVNGSYS APFFVTRFRE ALFHYSTLFD MFDATLPRDD 600 QQRLHFEQEF YRREAMNVIA CEGSERVERP ETYKQWQVRN MRAGFKLLPL NQQLMQKLSC 660 KVKGGYHRDF VFDEDGNWML QGWKGRVLCG SSCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MDPRFNPLPH SVNTYEFEDQ INLSSFEESL NHPLSYTDNY VAFGAPYNTS SPDVGNFAPS  60
SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPCMFHD PLALKAAEKS LYELLGKSYP  120
PSPYHTSDYV DHQLKSPDSI LWNSSEHSTS SSNTGTNSTN PQWVVDPGES RLPVESHPSE  180
YNIQPLVQSN SERFRGSLNN FNNSNAHVDS LVNPNVISNV FTDSESILQF KRGMEEASKF  240
LPNLSQFVID LDKYTFPPKM EEVSKEAVVK VEKDEKNHSP NGTKGRKHQY PEDSDHEDER  300
SNKQSAIYVE EEVELSEMFD RVLLCTDKGT GCSDVKREMP SEVNKSSDQN GQAHGSNGGK  360
TRAKKQGTKN EAVDIRTLLI SCAQSVAADD RRTAYEQLKQ IRQHSSPTGD AYQRLASVFA  420
DGLEARLAGT GTQQYAALAP KRITAAEKLK AYQMPGGPPK LRITGIDLSQ PGFRPAESLE  480
QTGNRLAKYC ERFHVPFEYT AIATQNWENI KIEDLKLASG ETVAVNCLFR LKNLLDETVV  540
VDSPRDAVLC LIRKMNPDIF VQAVVNGSYS APFFVTRFRE ALFHYSTLFD MFDATLPRDD  600
QQRLHFEQEF YRREAMNVIA CEGSERVERP ETYKQWQVRN MRAGFKLLPL NQQLMQKLSC  660
KVKGGYHRDF VFDEDGNWML QGWKGRVLCG SSCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-27	358	696	1	379	Protein SCARECROW
5b3h_D	2e-27	358	696	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606498.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S4BAP2	0.0	A0A1S4BAP2_TOBAC; scarecrow-like protein 14
STRING	XP_009606498.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]