PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04861g01012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 647aa    MW: 72118.1 Da    PI: 5.0703
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04861g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-094114481954
                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Niben101Scf04861g01012.1 411 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 448
                               664459******************************88 PP
2BELL125.81.6e-40274344272
                      BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               +qe+q+k +kLls+l+e+d+rY+qy++q+q+v+ssF++vag g+akpYt+lAl++iSrhFrcL+dai++qi
  Niben101Scf04861g01012.1 274 KQEVQNKLTKLLSMLDEIDRRYRQYYHQMQIVVSSFDVVAGDGAAKPYTALALQTISRHFRCLRDAICDQI 344
                               79********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-60195342IPR006563POX domain
PfamPF075261.5E-50201340IPR006563POX domain
PROSITE profilePS5007112.163389452IPR001356Homeobox domain
SMARTSM003891.0E-9392456IPR001356Homeobox domain
CDDcd000863.45E-12392453No hitNo description
SuperFamilySSF466892.14E-17393460IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29395458IPR009057Homeodomain-like
PfamPF059204.3E-18409448IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MATYFPNPNN QREAETFQNF RQSLPGSYSE ASNAQENMMV FMNYSSSGTY SDMLTGTSQQ  60
QNSCINIPPV GDSDSNSTSQ QEILSNLGGS RMGIHDFSAW RDSRNEMLYL SLGSNIPSGI  120
GISHVHSQNP NQGFTSFLNP ASSIPGEVSG GNVSFGDGDN SQSKQQRNAD YLPPDYPGSN  180
SDAMKGGYNS PYGTSSIGRN VPNSKYLKAA QYLLDEVVNV RKAIKENNSK KELTKESRES  240
DGDSKNKSSD PPANGSTDPQ DSKNHQSELS QTDKQEVQNK LTKLLSMLDE IDRRYRQYYH  300
QMQIVVSSFD VVAGDGAAKP YTALALQTIS RHFRCLRDAI CDQIRASRRS LGEQDASENS  360
KAVGISRLRY VDQHNRQQRA LQQLGMMQQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK  420
DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGGTEMDSN SSSEFASRLA  480
SKESKVEETE ELKQNETSEY EQYNSDQILE SKSNHVPDVE MEGANNAETQ SQSGMQNQTQ  540
RDEPPPAMDN CNLFQDTFVQ GNDRYSNFGR FGSGNVLPNG VSLTLGLQQG EGSSLPMSIE  600
SHGSYVPLRV DEMYSTAPTT MVSETAEFNC LDSGNRQHPF WLLPSAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16398456563Homeobox protein Meis2
3k2a_B4e-16398456563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619240.10.0PREDICTED: BEL1-like homeodomain protein 7 isoform X1
RefseqXP_019246197.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A1J6IQJ00.0A0A1J6IQJ0_NICAT; Bel1-like homeodomain protein 6
STRINGXP_009619240.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-125BEL1-like homeodomain 6