PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04860g02011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 141aa    MW: 16116.3 Da    PI: 4.6512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04860g02011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-191666155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              ++++GVr+++ +grW+AeI+dp+    r k+++lg+++t+eeA   +++   kl+g
  Niben101Scf04860g02011.1 16 KKFRGVRQRP-WGRWAAEIWDPT----RgKQVWLGTYDTPEEAITVYDEVVVKLKG 66
                              59********.**********84....35********************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.7E-501141IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.15E-301674No hitNo description
PfamPF008474.6E-111754IPR001471AP2/ERF domain
PROSITE profilePS5103222.0231774IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-211774IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-271775IPR001471AP2/ERF domain
SMARTSM003801.6E-311780IPR001471AP2/ERF domain
PRINTSPR003678.5E-91829IPR001471AP2/ERF domain
PRINTSPR003678.5E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MINRLLSPDT DITSRKKFRG VRQRPWGRWA AEIWDPTRGK QVWLGTYDTP EEAITVYDEV  60
VVKLKGPDAV TNFPKVLMAD ITETESVTDG GEKRENDVAL LPTSVLRNDY FTPFHNLQFC  120
EVDAFGFDVD SLFRLPIFGM S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171674463ATERF1
3gcc_A1e-171674463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798127.12e-83PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046822e-64PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1U7Y1V44e-82A0A1U7Y1V4_NICSY; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009798127.16e-83(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-26cytokinin response factor 2