PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04826g01005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 177aa    MW: 19662.2 Da    PI: 8.9642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04826g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-173179355
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Niben101Scf04826g01005.1 31 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 79
                              9*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575120No hitNo description
Gene3DG3DSA:3.30.730.109.6E-303088IPR001471AP2/ERF domain
SMARTSM003807.2E-373093IPR001471AP2/ERF domain
PROSITE profilePS5103221.973087IPR001471AP2/ERF domain
CDDcd000184.06E-263089No hitNo description
SuperFamilySSF541717.85E-213088IPR016177DNA-binding domain
PfamPF008479.4E-113079IPR001471AP2/ERF domain
PRINTSPR003673.5E-113142IPR001471AP2/ERF domain
PRINTSPR003673.5E-116989IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEVDGGRSGG APVVGGGGGC CSGKIKKERI YKGIRMRKWG KWVAEIREPN KRSRIWLGSY  60
STPVAAARAY DTAVYYLRGP SARLNFPELL VGDGGLSDLS AASIRKKAVE VGARVDAIQN  120
SLAIHKHDHD HDQHRPRESR NHCCENGSPA QLKPCWFQEK PDLNVKPEPE DPELEYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1431941580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019228027.11e-126PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH946e-49ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A314KNJ51e-124A0A314KNJ5_NICAT; Ethylene-responsive transcription factor erf010
STRINGXP_009780503.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.19e-46DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]