PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04819g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 355aa    MW: 40724.3 Da    PI: 4.5377
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04819g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rgrWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf04819g00002.1 14 RGRWTEEEDEILTKYIQANGEGSWRSLPKNTGLLRCGKSCRLRWINYL 61
                              8*******************************99************97 PP
2Myb_DNA-binding43.76.2e-1467110146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T+ E+ +++++ + lG++ W++Ia++++ gRt++++k++w++
  Niben101Scf04819g00002.1  67 RGNITAAEEAIIIKLRATLGNR-WSLIAEYLP-GRTDNEIKNYWNS 110
                               7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.502961IPR017930Myb domain
SuperFamilySSF466892.1E-2711108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002494.5E-141461IPR001005SANT/Myb domain
CDDcd001672.50E-81661No hitNo description
PROSITE profilePS5129422.19262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2265116IPR009057Homeodomain-like
SMARTSM007171.7E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1267110IPR001005SANT/Myb domain
CDDcd001677.53E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRTPCCDKV GLKRGRWTEE EDEILTKYIQ ANGEGSWRSL PKNTGLLRCG KSCRLRWINY  60
LKTDLKRGNI TAAEEAIIIK LRATLGNRWS LIAEYLPGRT DNEIKNYWNS RLSRKVESLR  120
IPSDEKLPQA VVELAKKGTQ QLKKQRRRGT SPSSKSIASN LSKPDQPVRE SEFSPNETVV  180
PMPSMPNIEK EVLSSTINIT TSSWQEYGNN IIELDNDPMR WRDDIVLIDE DEELDQDFIL  240
SCLWNDEGEN LEIVENNNNN INNNNERVLS EEGGHDKIIV SNETKTLMGD WEYFWASHEE  300
VEQENNMSNN NYVSSWPLWD SNDNAGLQRN CTNEAMVDID AMQSDHSDLV AWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242894.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1J6J2L60.0A0A1J6J2L6_NICAT; Transcription factor myb12
STRINGXP_009790561.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-67myb domain protein 111