PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04813g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 415aa MW: 46066.5 Da PI: 9.4839 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 69 | 5.9e-22 | 114 | 157 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r+v++g+k+C H+hrg rsrk +e+ Niben101Scf04813g00009.1 114 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGQHMHRG-RRSRKLVEA 157 79*********************************.688888876 PP | |||||||
2 | WRC | 59.3 | 6.5e-19 | 302 | 337 | 2 | 37 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 +ep rCrR+DGKkWRCsr++++ +k+CE H+hrg + Niben101Scf04813g00009.1 302 TEPQRCRRSDGKKWRCSRNAIPRQKYCETHMHRGAK 337 79*******************************976 PP | |||||||
3 | QLQ | 42.1 | 2.6e-15 | 50 | 86 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT aQ+++L Q+ ++Ky+++++PvP +L + i++ Niben101Scf04813g00009.1 50 SVFTTAQFHELQLQAVIFKYIVSGLPVPFHLFFTIWN 86 67*****************************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-6 | 50 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 16.818 | 51 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.0E-11 | 52 | 85 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.778 | 114 | 160 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.8E-18 | 115 | 152 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 19.709 | 301 | 345 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-16 | 303 | 338 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MQPHLTSATA LSHSGKDERE KNEGSPPCIK LSLGYVVEEE EKGVNAIAKS VFTTAQFHEL 60 QLQAVIFKYI VSGLPVPFHL FFTIWNTVSS SLGAAAINRL YPTLGRFDYG SMMDPEPGRC 120 RRTDGKKWRC KRDVIPGQKY CGQHMHRGRR SRKLVEASEH VMKSDDMRIT SKRTKLYANS 180 DDPGSKCAPA SSKTSCLSST SRNNQNNSIE DSSAKPRPTN SCNSSEKQDN HMTVNRKDTT 240 TGIRTQSFIA ANDTDSKSID FNRISPSKTN QKQSYGDARN SGGLVPVFGI SAKIDLQHTT 300 ETEPQRCRRS DGKKWRCSRN AIPRQKYCET HMHRGAKKII AASDSVIVEP SKPSSYRFCH 360 QVIPKNDVTG INLNTSLSIS TLPDPQNITE DDNSNSNSTS DATTITDEIP SFVSH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800682.1 | 0.0 | PREDICTED: growth-regulating factor 9 isoform X2 | ||||
Refseq | XP_016473165.1 | 0.0 | PREDICTED: growth-regulating factor 9-like isoform X2 | ||||
TrEMBL | A0A1S4A948 | 0.0 | A0A1S4A948_TOBAC; growth-regulating factor 9-like isoform X2 | ||||
TrEMBL | A0A1U7Y988 | 0.0 | A0A1U7Y988_NICSY; growth-regulating factor 9 isoform X2 | ||||
STRING | XP_009800681.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7798 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 1e-34 | growth-regulating factor 9 |