PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04804g01016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 272aa    MW: 30940.5 Da    PI: 6.3105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04804g01016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.1e-151562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W+++Ed++l++++ ++G g+W++++   g+ R +k+c++rw +yl
  Niben101Scf04804g01016.1 15 KGLWSPDEDDKLKNYIIKYGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                              678*******************************************97 PP
2Myb_DNA-binding51.42.5e-1668113148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ +E+e ++ +++++G++ W+ Ia+++  gRt++++k++w++yl
  Niben101Scf04804g01016.1  68 RGAFSLDEEETILTLHAMFGNK-WSQIAQHLS-GRTDNEIKNHWHSYL 113
                               89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-22965IPR009057Homeodomain-like
PROSITE profilePS5129417.0581062IPR017930Myb domain
SuperFamilySSF466892.38E-2813109IPR009057Homeodomain-like
SMARTSM007179.6E-121464IPR001005SANT/Myb domain
PfamPF002492.6E-131562IPR001005SANT/Myb domain
CDDcd001672.73E-101862No hitNo description
PROSITE profilePS5129425.74263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2466117IPR009057Homeodomain-like
SMARTSM007176.7E-1567115IPR001005SANT/Myb domain
PfamPF002496.8E-1568113IPR001005SANT/Myb domain
CDDcd001671.69E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGCKSVDKTK QKHKKGLWSP DEDDKLKNYI IKYGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGA FSLDEEETIL TLHAMFGNKW SQIAQHLSGR TDNEIKNHWH SYLKKRVAKM  120
AQQITTSGNQ ESSSSFKKLI TQNSSLDSFE GSLADSDQSA DIPREPQKSN LPKVLFAEWF  180
SLDQFNGQDF HNFDPSNNNF GYNNSELQDI FMHSIPMSGG SYVNGINQEV NNGIVDDIFQ  240
PQLMKFEDSL SANGFEEFMS GEFSINDDVM YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763294.10.0PREDICTED: transcription factor LAF1-like
RefseqXP_016442378.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K41e-58LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1S3XQZ60.0A0A1S3XQZ6_TOBAC; transcription factor LAF1-like
TrEMBLA0A1U7VLR80.0A0A1U7VLR8_NICSY; transcription factor LAF1-like
STRINGXP_009763294.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.19e-63myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]