PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04763g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 414aa MW: 46278.9 Da PI: 4.1869 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.8e-19 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Niben101Scf04763g00014.1 34 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 83 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.94E-32 | 33 | 90 | No hit | No description |
Pfam | PF00847 | 1.0E-13 | 34 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-19 | 34 | 92 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.559 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 34 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MSSDDQAGNA PWEEMVKEAA AAAALGGAPR ARKRFVGVRQ RPSGRWVAEI KDTIQKIRVW 60 LGTFDTAEEA ARAYDEAACL LRGANTRTNF WPSSSSSSST PALPSKITNL LLTRIKARNN 120 SLAAAAAAAA VSSSSDSSEP VEIRDQDKQL EECRDETAYF SDSQYMEYLK DPEDQITDNN 180 MISNTSAINM SNFTNTLEAC WTENDYSVVQ PVMKSDENNS SGGEINDNMV EEDVEEEIEE 240 ENDSSDIGDV EPINFHFVDE IESSCYYSPF EIADEINSTD TMDQQGMVYG DESLMISEAM 300 RRMNYERQFS ASLYAFNGIT ECLKLKLKSG GIMQRERSEK LSRLRNACKR KRKEDEKKIN 360 EQGISAEMGE RKETEYSSQS SLETGQSSLL ETTYESELSL WSSIDLPPIC AFFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 34 | 90 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019242352.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
Refseq | XP_019256539.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
TrEMBL | A0A1J6I7X0 | 0.0 | A0A1J6I7X0_NICAT; Ethylene-responsive transcription factor rap2-11 | ||||
STRING | XP_009768616.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-21 | related to AP2 11 |