PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04748g01012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 143aa    MW: 16041.1 Da    PI: 10.644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04748g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-14801343289
                               --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++  ++l+de+ rsW v++    ++ ++ +t+GW++F +an++++gD+  F+l+++ +
  Niben101Scf04748g01012.1  80 RPSLMILRDEKQRSWPVQV--GPQGHHFAITRGWRQFREANNVQVGDTYKFELIDN-G 134
                               455799*************..999999*************************9985.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1666141IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.008169139IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-1576141IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-1380135IPR003340B3 DNA binding domain
CDDcd100172.65E-1284143No hitNo description
PROSITE profilePS5086311.22384143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGNASLQPEG KKTNFDARSV STEDLRANAS LRREGKKSNL DGKRVSTRDM PATKARVCAS  60
TSVNANPHFV STITPYFISR PSLMILRDEK QRSWPVQVGP QGHHFAITRG WRQFREANNV  120
QVGDTYKFEL IDNGTVPVAH FHC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254821.16e-78PREDICTED: B3 domain-containing protein REM17-like isoform X2
TrEMBLA0A1J6HZ944e-76A0A1J6HZ94_NICAT; B3 domain-containing protein rem10
STRINGXP_009781490.15e-47(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-08B3 family protein