PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04740g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 386aa    MW: 41728.7 Da    PI: 7.806
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04740g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP77.32.3e-2473124150
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS..EE CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr..fh 50 
                               +CqvegC++dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsr   h
  Niben101Scf04740g00007.1  73 RCQVEGCQVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRgnLH 124
                               6**********************************************93345 PP
2SBP37.18.2e-121441685276
                               TTT--SS--S-STTTT-------S- CS
                       SBP  52 lsefDeekrsCrrrLakhnerrrkk 76 
                               l+efD++krsCrrrLa hnerrrk+
  Niben101Scf04740g00007.1 144 LEEFDQGKRSCRRRLACHNERRRKP 168
                               89*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-2767155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.14571168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.85E-2872169IPR004333Transcription factor, SBP-box
PfamPF031103.7E-1974126IPR004333Transcription factor, SBP-box
PfamPF031107.3E-6142167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNGQWNSVME LGSVSSPGSN SSSSDSLNGL KFGKKIYFEN VGGGSSPVTG AGNLPPASKR  60
GRGGLMQGGQ PPRCQVEGCQ VDLSDAKAYY SRHKVCGMHS KSPTVIVAGL EQRFCQQCSR  120
GNLHSLYIYK GESTVDAPDI TQWLEEFDQG KRSCRRRLAC HNERRRKPPS GSLFSTHYGS  180
LSSSIFENNS SKSGSFLLDF SSHPHVNESS WPNTRASEQG WDHQSTASGK FLQRPWLNNS  240
ENATSELVLQ GSPTRTNYVP SGECFSGVSD SRTGALSLLS NRSWGSRNPP SSLGANIDGI  300
HTIQPSDSHG APTNHFSSPS LRFKGNEASS SSHEMPSDLG LGQISQAAED QYCGELGIGQ  360
QSGRQNMELD HSNGYHPSVQ NVHWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-23741671184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254891.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A1J6ICH40.0A0A1J6ICH4_NICAT; Squamosa promoter-binding-like protein 9
STRINGXP_009776998.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.13e-43squamosa promoter binding protein-like 15