PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04731g03002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 500aa MW: 56859 Da PI: 9.0063

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04731g03002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.9	3.3e-29	73	156	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++e+laL+++r++m+ ++r+++lk+plW+e+s+km e g++r++k+C+ek+en+ k++k++k+g+++r ++ +++++f+ql Niben101Scf04731g03002.1 73 RWPHEETLALLKIRSQMDIAFRDSNLKGPLWDEISRKMGELGYNRNAKKCREKFENIYKYHKRTKDGRSGR--QTGKNYRFFEQL 155 8******************************************************************97..56668****9 PP trihelix 86 e 86 e Niben101Scf04731g03002.1 156 E 156 7 PP
2	trihelix	93.4	2.2e-29	365	450	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW+k ev aLi++r++++ ++ + g+ k+plWe++s m++ g+ r++k+Ckekwen+nk+y+++keg+k+r +e+s+tcpyf+ Niben101Scf04731g03002.1 365 RWPKAEVEALIKLRTNVDLQYPDnGSPKGPLWEDISTGMKKLGYDRNAKRCKEKWENINKYYRRVKEGQKRR-PEDSKTCPYFHL 448 8***************99996489****************************************97.9********9 PP trihelix 85 le 86 l+ Niben101Scf04731g03002.1 449 LD 450 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.1E-4	70	132	IPR001005	SANT/Myb domain
Pfam	PF13837	3.5E-19	72	156	No hit	No description
CDD	cd12203	3.95E-23	72	137	No hit	No description
PROSITE profile	PS50090	7.294	72	130	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.7E-4	73	131	IPR009057	Homeodomain-like
SMART	SM00717	0.13	362	425	IPR001005	SANT/Myb domain
Pfam	PF13837	4.7E-22	364	452	No hit	No description
CDD	cd12203	1.28E-20	365	430	No hit	No description
PROSITE profile	PS50090	6.853	365	423	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MLETSVLLED SANAAAAGGA AVTQAVELRN DGGGGCGSVG GGSEEEERSR GELEGEKNNI 60 SGGNRWPISG GNRWPHEETL ALLKIRSQMD IAFRDSNLKG PLWDEISRKM GELGYNRNAK 120 KCREKFENIY KYHKRTKDGR SGRQTGKNYR FFEQLELLDN QINRMDTTTS ISMPVPMPMP 180 MTMIKPATSG CQDFSYRNQG FNPEFMSTST STTSSSGKEY GSVKKKRKLA GYFERLMKQV 240 LDKQEDLQNK FLEAIEKSER DRIAREEAWK VQEIARLKKE KEALANERAI SAAKDAAVIA 300 FLQKISEQTV QVQSPMELSH EKKTENSSVK TVESQENVLQ QENMLDKQDI IDSAGENSFH 360 MSSCRWPKAE VEALIKLRTN VDLQYPDNGS PKGPLWEDIS TGMKKLGYDR NAKRCKEKWE 420 NINKYYRRVK EGQKRRPEDS KTCPYFHLLD SIYQIKSKKQ LLSSENPGSS MKAGQLLMQI 480 MNQQQQQQLE TERQNVEQSQ

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MLETSVLLED SANAAAAGGA AVTQAVELRN DGGGGCGSVG GGSEEEERSR GELEGEKNNI  60
SGGNRWPISG GNRWPHEETL ALLKIRSQMD IAFRDSNLKG PLWDEISRKM GELGYNRNAK  120
KCREKFENIY KYHKRTKDGR SGRQTGKNYR FFEQLELLDN QINRMDTTTS ISMPVPMPMP  180
MTMIKPATSG CQDFSYRNQG FNPEFMSTST STTSSSGKEY GSVKKKRKLA GYFERLMKQV  240
LDKQEDLQNK FLEAIEKSER DRIAREEAWK VQEIARLKKE KEALANERAI SAAKDAAVIA  300
FLQKISEQTV QVQSPMELSH EKKTENSSVK TVESQENVLQ QENMLDKQDI IDSAGENSFH  360
MSSCRWPKAE VEALIKLRTN VDLQYPDNGS PKGPLWEDIS TGMKKLGYDR NAKRCKEKWE  420
NINKYYRRVK EGQKRRPEDS KTCPYFHLLD SIYQIKSKKQ LLSSENPGSS MKAGQLLMQI  480
MNQQQQQQLE TERQNVEQSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	228	KKKRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626647.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A1S3Z0J0	0.0	A0A1S3Z0J0_TOBAC; trihelix transcription factor GT-2-like
TrEMBL	A0A1U7VX14	0.0	A0A1U7VX14_NICSY; trihelix transcription factor GT-2-like
STRING	XP_009626647.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9794	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-69	Trihelix family protein