PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04712g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 266aa    MW: 29618.5 Da    PI: 10.603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04712g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-121262146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                              +++WT+eE+  l+ +v+++G+g W+tI +          R+  ++k++w++
  Niben101Scf04712g00012.1 12 KQKWTPEEEAALKAGVRKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 62
                              79***********************************66**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.915765IPR017930Myb domain
SuperFamilySSF466893.66E-16978IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-151163IPR009057Homeodomain-like
SMARTSM007175.7E-81166IPR001005SANT/Myb domain
PfamPF002491.3E-91262IPR001005SANT/Myb domain
CDDcd116605.76E-191363No hitNo description
PROSITE profilePS5150421.37284153IPR005818Linker histone H1/H5, domain H15
SMARTSM005267.5E-890148IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.36E-1394162IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.3E-1295154IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.0E-695146IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMLLNTWMGA PKQKWTPEEE AALKAGVRKH GPGKWRTILK DPEFSGVLCL RSNVDLKDKW  60
RNMSVMANGW GSREKARLAL KRMNQTRKQD ENSLAAISNL KEPGGCNKTT IATYIEDQYW  120
APPNFKRVLS VKLKYLTATG RLIKVKRKYR IAPMSALSDR RRMPSITLLE SGQKISNRVD  180
RDDMSMCTTK AQVDLELAMM RSMTLQEAAA SAAQAVAEAE AAIEDAKEAA RVAEAADAEA  240
EAAKAFAKAA MKTLQGRSIP RMMIRA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606142.11e-138PREDICTED: telomere repeat-binding factor 1
RefseqXP_009606143.11e-138PREDICTED: telomere repeat-binding factor 1
RefseqXP_009606145.11e-138PREDICTED: telomere repeat-binding factor 1
RefseqXP_009606146.11e-138PREDICTED: telomere repeat-binding factor 1
RefseqXP_009606147.11e-138PREDICTED: telomere repeat-binding factor 1
RefseqXP_016476120.11e-138PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476121.11e-138PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476122.11e-138PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476123.11e-138PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476125.11e-138PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476126.11e-138PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-87TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1S4AHF71e-136A0A1S4AHF7_TOBAC; telomere repeat-binding factor 1-like
STRINGXP_009606142.11e-137(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-85telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]