PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04700g03006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 41845.2 Da PI: 7.5744 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ q+G+g +W + + ++g++R++k+c++rw++yl Niben101Scf04700g03006.1 14 KGPWSPEEDAKLKSYIDQHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.8e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd +++ + G++ W+ Ia+ ++ gRt++++k++w++ Niben101Scf04700g03006.1 69 GGFSQEEDNIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.131 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.35E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.16E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.582 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MGRAPCCDKN SVKKGPWSPE EDAKLKSYID QHGTGGNWIA LPPKIGLKRC GKSCRLRWLN 60 YLRPNLKHGG FSQEEDNIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK 120 QRKNLRGKSQ KQGSKKGRDQ MNRSMDSHNN IDTNPSWSEF PILQPIPYSN DEPRYNKDHT 180 SIRKLLMKLG GKFYDDDDKP MSGALNPYYD PMDNSLMHPI YHNSINLISS APMGVMNTSP 240 FTNSHEYYVD GKAVCWADTD TDTEKQKLGE PMGSDTTVAL ALNYGCNSTT ELEHMGYTNP 300 QKLDDFEMLY EDMLNNKPST TLEGGLDWKD MNNLVFPFPP LVVSNNEVHQ HGTLLEEGAL 360 NELRYPRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785472.1 | 0.0 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | A0A1U7WZZ4 | 0.0 | A0A1U7WZZ4_NICSY; transcription factor RAX1-like | ||||
STRING | XP_009785472.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-72 | myb domain protein 36 |