PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04691g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 656aa    MW: 72789.5 Da    PI: 6.6168
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04691g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11249305155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Niben101Scf04691g00002.1 249 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 305
                               57*******************4444.2455535555.779999**************98 PP
2AP247.64e-15348399155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Niben101Scf04691g00002.1 348 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 399
                               78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-9249305IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-14249315IPR016177DNA-binding domain
CDDcd000183.60E-19249315No hitNo description
SMARTSM003803.8E-22250319IPR001471AP2/ERF domain
PROSITE profilePS5103216.99250313IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-11250314IPR001471AP2/ERF domain
PRINTSPR003676.6E-6251262IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-17348408IPR016177DNA-binding domain
PfamPF008475.8E-10348399IPR001471AP2/ERF domain
CDDcd000182.04E-24348409No hitNo description
SMARTSM003802.2E-32349413IPR001471AP2/ERF domain
PROSITE profilePS5103219.203349407IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-18349407IPR001471AP2/ERF domain
PRINTSPR003676.6E-6389409IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MASSMNNWLA FSLSGHEELT SQTSQEISGS VDVSGEYFDL TSHDSTLPSL NVVPHNTPFG  60
IFEAFNRNHK SQDWSSHDPN YKTTSEMSML MGISCNTSQH LENQEPPKLE NFLGIGEVQN  120
NNNNNINGDY SIYSSVTNTT NNIGSNTNNN TIGLSMIKNW LRNNPNTTTP SLQNDKKEGE  180
CVVVGGGNNA QSLSLSMSTG GGENSCSSEN KKQQENANGS NASIIDGQNN GAIEAVPRKS  240
IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQGGYDKEE KAARAYDLAA  300
LKYWGPTTTT NFQISNYEKE LEEMKHMTRQ EYVASLRRKS SGFSRGASVY RGVTRHHQHG  360
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFEINR YDVKSILESS  420
TLPIGSAAKR LKDAEQADQI ALDYQRASQE TIGSHLTNGT INSYCANANH IWSNIAFQQA  480
QPLNMHYPYS QQQQQQRLWC KQEVQDSDHM TQNFQDFHQL QNGNIAHNFM QPTSALHNLM  540
GLDTSTSMEH NNVTYQGVGY ASSPSGGFVL PQLSQGNGYG ENEVKQQLGN ENIFGYYHSQ  600
QSTSNGSVKA AGLYDHQDSV SCNNWMSTVV PALASRNNTV AICHGGAPTF TVWNDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450856.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S3YF420.0A0A1S3YF42_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009801491.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-133AP2 family protein